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15 protocols using timp 2

1

Serum Biomarker Measurement Protocols

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Serum biomarker levels were measured using commercially available ELISA kits for
MMP-7, MMP-9, TIMP-1, TIMP-2 (all R&D System, Minneapolis, MN, USA), and
MMP-11 (Abnova, Taipei, Taiwan), and serum CEA and CA19-9 levels were measured
using an ARCHITECT i2000sr automatic immunoassay analyzer with supporting
reagents (Abbott Diagnostics, Chicago, IL, USA). All testing procedures were
performed in accordance with the manufacturers’ instructions. The intensity of
color developed in each well was measured using a microplate reader (Molecular
Devices, Sunnyvale, CA, USA) at an absorbance of 450 nm (correction wavelength
540 nm). All determinations were performed in duplicate. Serum C-reactive
protein (CRP) levels were measured using an automatic biochemical analyzer
(AU5800, Beckman Coulter, Brea, CA, USA).
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2

CD200 and CD200R Antibodies in Immunoassays

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Phorbal 12-myristate 13-acetate (PMA) and Ionomycin were purchased from Sigma-Aldrich. PMA was reconstituted to 10mg/ml stocks in DMSO and was further diluted to a working concentration of 40ng/μl in AIMV medium. Imiquimod, a TLR7 agonist, was purchased from LKT Laboratories (St Paul, MN) and reconstituted to 1mg/ml in DMSO. Recombinant TIMP1, TIMP2, TIMP3, and TIMP4 were purchased from R&D Systems and were reconstituted to working concentrations in AIMV medium. The protease inhibitors GM6001 and TAPI-0 were purchased from Calbiochem and reconstituted to 10mM and 1mg/ml stock, respectively, in DMSO.
The monoclonal rat anti-hCD200 antibodies 1B9 and 3G7, and the polyclonal rabbit serum against the extracellular region of CD200 (CD200v+c), were described previously [2 (link)]. A polyclonal rabbit serum against the human CD200 receptor (CD200R1) was generated by immunization of rabbits with a fusion protein containing the extracellular region of human CD200R1 with a his-tag at the N-terminal.
Antibodies against CD19 and CD62L used in FACS analyses were purchased from Biolegend. The apoptosis detection kit for staining of Annexin V and 7AAD was purchased from BD Biosciences. The Pan-Cadherin antibody, used as a plasma membrane marker for loading controls in Western blots, was purchased from Abcam.
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3

Cell Lysate Preparation and Immunoblotting

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Cell lysates were prepared using 1X lysis buffer (Cell Signaling Technology, Danvers, MA) and supplemented with phosphatase inhibitor cocktail (phosSTOP, Roche Life sciences, Indianapolis, IN). For immunoblot analysis serum-free conditioned medium was concentrated using 10 kDa cutoff filter (YM-3 Microcon, Millipore) to load 35 μg total protein/lane. Immunoblotting was conducted as described before (1 (link),3 (link)). For ELISA neat serum-free conditioned media or 4-fold diluted lysates were used. ELISAs used in the study include: ADAM12, thrombospondin-1, VEGF, MMP-9, TIMP-2 (R & D Systems, Minneapolis, MN). Protein concentration of the lysates and conditioned medium was determined using the Bradford method (Biorad laboratories, Hercules, CA).
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4

Western Blot Analysis of Chemerin, TIMP, and MMP

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Medium was concentrated using StrataClean resin (Agilent Technologies Ltd) and processed for western blotting as previously described [13 (link)] using antibodies to chemerin (R&D Systems), TIMP-1, TIMP-2 and MMP-1 (R&D Systems).
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5

Chemerin-induced Cell Migration Assays

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Scratch wound migration assays were performed on confluent monolayers of AGS cells as previously described [41 (link)]. Transwell migration and invasion chemotaxis assays were performed using BD inserts (Corning, NY, USA) as previous described (25,000 cells per insert) [46 (link)]. Chemerin or CAM-conditioned medium (CM) were added in the lower well together with CCX832, α-NETA, Ro-320432, human recombinant TIMP-1 or TIMP-2 (R&D Systems), or vehicle, as appropriate.
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6

Quantifying Secreted Angiogenic Factors

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Protein levels of MMP2, TIMP2, and VEGF in the serum-free supernatants of HCC cell lines and in the tumor tissue extracts were measured via commercially available MMP2 (R&D Systems), TIMP2 (Amersham Biosciences), and VEGF ELISA (R&D Systems) kits. Absorbance was measured at 450 nm, using a microplate spectrophotometer with the correction wavelength of 570 nm. The assays were conducted in triplicate.
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7

Biomarker Quantification: NGAL, KIM-1, TIMP2, IGFBP7

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The concentrations of NGAL, KIM-1, TIMP2 (all from R&D Systems) and IGFBP7 (Cusabio Technology LLC) were measured by using ELISA kits according to the manufacturers’ instructions.
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8

Protein Expression Analysis Protocol

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To prepare the protein extracts, the cells were rinsed twice with ice-cold PBS and harvested. After centrifugation, the cells were resuspended and extracted in lysis buffer (Thermo Fisher Scientific, Inc.) for 30 min on ice. Protein concentrations were assayed using Pierce Coomassie Plus reagent according to the manufacturer’s instructions, and 40 μg of protein was loaded for separation by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE). The proteins were then transferred to polyvinylidene difluoride membranes (Immobilon-P; EMD Millipore Corporation, Billerica, MA, USA). The membranes were blocked in Tris-buffered saline containing 5 % bovine serum antigen (BSA) and probed with HIF-1a, tissue inhibitor of metalloproteinase-2 (TIMP-2), VEGF-A, hepatocyte growth factor (HGF), matrix metalloproteinase (MMP)-2, and MMP-9 (all from R&D Systems Inc.) corresponding antibodies. Reacted bands were detected by horseradish peroxidase-conjugated secondary antibodies and enhanced chemiluminescence substrates (PerkinElmer, Boston, MA, USA).
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9

Metalloprotease Inhibitor Evaluation Protocol

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Metalloprotease inhibitors, including BB94 (batimastat), TAPI-1 and TAPI-2 (Santa Cruz Biotechnology), and TIMP1, TIMP2, TIMP3, and TIMP4 (R&D Systems), were added at the time of GPR37L1 induction (or 5 h after transfection in the case of U87 MG cells) or 24 h after induction for TX14A experiments, and cells were then incubated for 24 h before lysis. For MG132 proteasome inhibition, cells were induced with doxycycline overnight and then treated with MG132 for 6 h before harvest. Verification of TIMP activity in vitro using activated MMP-2 and the fluorogenic peptide substrate MCA-Pro-Leu-Gly-Leu-DPA-Ala-Arg-NH2 was performed as per the protocol provided by R&D Systems.
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10

Endometrial Protein Expression Analysis

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The endometrial tissue was mixed with lysis buffer and the protease inhibitor. Then, the samples were homogenized and centrifuged (12,000 rpm × 10 min), and the supernatants were collected. After determining the protein concentration, the samples were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS PAGE) and transferred to PVDF membranes. The membranes were blocked with 5% nonfat milk for 1 h at room temperature and then incubated with the primary antibody overnight at 4 °C. The antibodies included anti-estrogen receptor α (ERα, Santa Cruz Biotechnology, USA), anti-progesterone receptor A (PRA, Proteintech, China), anti-hypoxia inducible factor 1α (HIF1α, R&D, USA), anti-VEGFA (Proteintech, China), anti-angiopoietin 2 (ANGPT2, Abcam, USA), anti-cyclooxygenase 2 (COX2, CST, USA), anti-prostaglandin E receptor 2 (EP2 receptor, Abcam, USA), anti-matrix metallopeptidase 2 (MMP2, Abcam, USA), anti-MMP9 (Abclone, China), anti-tissue inhibitor of metalloproteinase 2 (TIMP2, R&D, USA), anti-FGF2 (Santa Cruz Biotechnology, USA), and anti-β-actin (Proteintech, China). Next, the PVDF membranes were incubated with the fluorescent secondary antibodies (CST, USA) at room temperature for 1 h. Lastly, the protein bands were scanned using the Odyssey Infrared Imaging System (Li-Cor Biosciences, USA).
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