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6 protocols using lsm700 laser scanning confocal

1

Immunofluorescence Staining of Neurons

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Patient derived neurons were washed with PBS and fixed in fresh 4% paraformaldehyde in PBS overnight rocking at 4°C. Cells were washed with PBT and blocked in PBT + BSA for 1 h at room temperature. Primary antibody was added to PBT overnight rocking at 4°C. Antibodies: 1:100 Syt-1, Vesicular Glutamate 1 and 2 (VGlut1/2, Synaptic Systems #135503) or Postsynaptic Density 95 (PSD95, Abcam #ab18258), Acetylated-Tubulin (Ac-Tubulin, Abcam #ab179513). Primary antibody was washed off three times in PBT and incubated in secondary antibody shaking overnight at 4°C (1:500 488- 555- 680- (Jackson ImmunoResearch, see above) in PBT + BSA). Secondary was washed off three times in PBT, rocking for 2 h at room temperature. Cells were washed three times in PBT and mounted on slides with DAPI (Prolong Gold Antifade with DAPI (Life Technologies #P36935). Imaging was performed on an inverted Zeiss LSM700 Laser Scanning Confocal and processed on Fiji (ImageJ).
SH-SY5Y cells were plated on coverslips and differentiated over 4 days with retinoic acid medium. The same imaging protocol was performed as above. Antibody: 1:200 Beta-Actin.
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2

Immunofluorescence Assay for Cytoskeletal Proteins

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Cells were fixed with 4% paraformaldehyde/phosphate-buffered saline (PBS) for 10 min at room temperature, followed by three washes in PBS. Cells were permeabilized in 0.01% Triton/PBS for 1 min, followed by three washes in 0.01% Tween/PBS and then blocked with PBS supplemented with 10% donkey serum for 1 h. Cells were incubated with primary antibody (YAP (Cat#14071, 1:200, Cell signaling), pMLC (Cat#3671, 1:100, Cell signaling), actin (Cat#A5316, 1:200, Sigma) and Flag (Cat#F3165, 1:400, Sigma)) in blocking buffer for overnight. After three washes in 0.1% Tween PBS, cells were incubated in secondary antibody and 1 μg/ml DAPI for 1 h at room temperature. Cells were then washed, mounted and examined with a confocal microscope (Zeiss LSM 700 Laser Scanning Confocal), equipped with a 25× or 40× oil objective lens or epimicroscope (Zeiss Axio Observer Z1).
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3

NO Quantification in Embryos

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Embryos were incubated in NO-indicator 4-Amino-5-Methylamino-2′,7′-Difluorofluorescein diacetate (1:150), (DAF-FM diacetate – Invitrogen, Lepiller 2007 (link)) for 2–3 hours at 26°C. Embryos were fixed in 4% PFA overnight, embedded in 4% agarose, vibrotome sectioned (100 um), counterstained with DAPI and imaged on a Zeiss LSM 700 Laser Scanning Confocal. For NO quantification, 120 embryos per condition were decapitated, washed, dounced, and spun (10min, 1300rpm). The clear fraction was divided in triplicate, loaded on a microplate (Corning 3993- half-area, flat bottom, black), and fluorescence was measured using a Teican microplate reader. Untreated head solution was used to measure background fluorescence
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4

Intracellular PLGA Microparticle Tracking

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A small batch of PLGA microparticles were fabricated according to the methodology above but the fluorescent marker Nile Red was added into the organic solution to generate a final concentration of 0.4 mg/mL. These microparticles were administered to primary human monocytes and followed the same procedural timeline, except on day 5 the cells were washed and fixed in 10% formaldehyde. Cells were imaged on a Zeiss LSM700 Laser Scanning Confocal to visualize fluorescent intracellular microparticles.
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5

Immunohistochemistry of Bone Sections

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Isolated long bones were fixed in 4% paraformaldehyde, decalcified using 0.5 M EDTA in phospate buffered saline (PBS) then vibratome (100‐200 μm) or frozen (20‐25 μm) sectioned. Immunofluorescence was performed using chicken or rabbit GFP antibody (Abcam, 1:1000), rabbit osterix antibody (Abcam, 1:600), rat CD31 antibody (Pharmingen, 1:200), rat CD45 antibody (Pharmingen, 1:100), rabbit perilipin antibody (Sigma, 5 μg/mL), rabbit mTert antibody (Millipore, 1:150) or rabbit osteocalcin antibody (Abcam, 10 μg/mL) and Alexa Fluor 488, 594, 633, or 647 secondary antibodies (Molecular Probes, 1:400). LipidTOX Deep Red (ThermoFisher, 1:200) was used for lipid staining. Nuclei were stained using DAPI. Sections were imaged using either a 90i Eclipse (Nikon) or LSM 700 laser scanning confocal (Zeiss) microscope.
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6

Multimodal Microscopy Imaging Protocol

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Zeiss AxiObserver.Z1 coupled with Yokogawa spinning disk confocal head (CSU-X1, Yokogawa, Tokyo, Japan) was used for image acquisition. ORCA-R2 CCD camera (C10600, Hamamatsu Photonics, Hamamatsu, Japan) was used for spinning disk and Flash4.0 (Hamamatsu Photonics) was attached to the other port for epi-fluorescence imaging. 63× oil DIC (N.A.=1.4) Plan-Apochromat (420782–9900) or 40× oil DIC (N.A.=1.3) (UV) VIS-IR Plan-Apochromat (420762–4800) objective lenses were used for imaging. For immunofluorescence staining, LSM700 laser scanning confocal (Zeiss) equipped with 100× oil DIC (N.A.=1.46) Plan-Apochromat objective (420792–9800) was used.
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