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Pulled glass pipette

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A pulled glass pipette is a laboratory instrument used for the precise measurement and transfer of small volumes of liquids. It is manufactured by heating and drawing out a glass tube to create a narrow, tapered tip. The pipette allows for the accurate and controlled delivery of liquid samples, typically ranging from microliters to milliliters, making it a versatile tool in various scientific and medical applications.

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8 protocols using pulled glass pipette

1

Stereotaxic Virus Injection in Mice

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Stereotaxic surgeries were performed as described previously (Atasoy et al., 2012 (link)). Briefly, P40-P50 mice were anaesthetized with isoflurane in the stereotaxic instrument (David Kopf instruments, Tujunga-CA). Skull was exposed after an incision on the scalp and drilled to obtain a small hole for injection. ~200 to 600 nL virus was injected to each side intracranially using a pulled glass pipette (Drummond Scientific, Wiretrol, Broomall-PA) with 50 µm tip diameter. Viral injections were performed on the NTS (bregma: —7.00 mm, midline: ± 0.50 mm, dorsal surface —3.00 mm) for 30 nL/min by a micromanipulator (Narishige, East Meadow, NY), allowing 10 min time for each injection. Scalp was stitched after removing the pipette. At least 5 to 6 weeks were given for animal recovery and transgene expression before further experiments.
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2

Calcium Imaging of Arcuate Nucleus Neurons

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P60 Npy-gfp mice were anesthetized with isoflurane and ~300 nL of rAAV2-syn-FLEX-jGCaMP7 virus70 (link) was injected bilaterally to ARC using a pulled glass pipette (Drummond Scientific) with 50 μm tip diameter as described previously.95 (link) The virus was injected at the rate of 30 nL/min by a micromanipulator (Narishige), allowing 10 min time for each injection. At least 3 weeks were given for animal recovery and transgene expression before further experiments. Slices were prepared as described above and CNQX (10 μM) + AP5 (50 μM) + PTX (50 μM) cocktail was added to the recording aCSF solution. Images were obtained on Scientifica SliceScope pro3000 using Hamamatsu Orca Flash 4.0v3 camera at 3Hz. A baseline of 5–10 min was imaged using 470 nm stimulation (CooLED PE4000) and GFP filter set 525/50m (Chroma) before bath administration of Ang-II (2 μM). Images were first background subtracted and ΔF values were obtained by subtracting baseline (F0) fluorescence, which was defined as the minimal fluorescence value in 5 min moving window. The area under the ΔF/F0 curve was calculated using Axon pCLAMP software before and after administration of Ang-II.
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3

Stereotaxic Virus Injection and Sensor Implantation

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Stereotaxic surgeries were performed as described previously [50 (link)]. Briefly, 1–2 months old mice were anaesthetized with isoflurane in the stereotaxic instrument (David Kopf instruments, Tujunga-CA). Skull was exposed with an incision on the scalp and drilled for injection. ∼200–600 nL virus was injected intracranially using a pulled glass pipette (Drummond Scientific, Wiretrol, Broomall-PA) with 50 μm tip diameter. Viral injections were performed on DRN (bregma: −3.80 mm, midline: ±0 mm, dorsal surface: −2.50 mm) and ARC (bregma: −1.15 mm, midline: ±0.30 mm, dorsal surface: −5.70 mm) by a micromanipulator (Narishige, East Meadow, NY), allowing 10 min time for the injection. The 5HT2h sensor injections were conducted on LH (bregma: −1.15 mm, midline: ±1.00 mm, dorsal surface: −5.10 mm), or BNST (bregma: +0.62 mm, midline: ±0.42 mm, dorsal surface: −4.45 mm). Optic fiber placement was performed after removing the pipette. At least 4–6 weeks were given for animal recovery and transgene and sensor expression before further experiments.
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4

Intracranial Viral Injection Protocol

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Intracranial injection was performed as described previously [[28] , [29] (link), [30] ]. Anterograde labeling using AAV injections was performed using a stereotaxic device (David Kopf, USA) under isoflurane gas anesthesia (1.5–2%). Following a scalp incision, the skull was exposed and drilled to create a tiny injection hole. Utilizing a pulled glass pipette (Drummond Scientific, Wiretrol, Broomall, PA, USA) with a 50 μm tip diameter, 300 nL pAAV-FLEX-GFP/pAAV-hSyn-DIO-hM3D(Gq)-mCherry viruses were intracranially injected into each side according to groups. Virus injections were performed on the ARC bilaterally (AP: 1.35 mm; ML: 0.35 mm; DV: 5.75 mm) [31 (link)] for 40 nL/min by a micromanipulator allowing 15 min for each injection. After taking out the pipette, the scalp was sutured. Mice were allowed to recover for at least two weeks before performing any procedure.
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5

Stereotaxic Viral Injections and Fiber Photometry in ARC

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Stereotaxic surgeries were performed as described previously.64 (link) Briefly, under anesthesia with 1.5% isoflurane in the stereotaxic instrument (David Kopf instruments, Tujunga-CA), scalp was incised to expose skull, a small hole was opened with a drill and 150 to 600 nL virus (pGP-AAV-CAG-FLEX-jGCaMP7s-WPRE (AAV1, Addgene 104495), AAV9-syn-deltaLight3.015 and AAV9-syn-delta-Light015 (Canadian Neurophotonics, sensor: 300nL of 3.3 × 1012 vg/mL and mutant sensor: 300nL of 9.5 × 1012 vg/mL respectively), AAV-CAG-GFP (AAV5, Addgene 37825), AAV-ChR2) was injected bilaterally and intracranially using a pulled glass pipette (Drummond Scientific, Wiretrol, Broomall-PA). Viral injections were performed in the ARC (bregma: −1.25 mm, midline: ±0.25 mm, dorsal surface: −5.6 mm) by a micromanipulator (Narishige, East Meadow, NY). Scalp was stitched, or ferrule placement was performed after viral injections. For in vivo fiber photometry recording, ferrule capped metal optical fiber (200 μm core diameter, NA = 0.48, Thorlabs) was implanted above the ARC using the same coordinates, except for the dorsal surface, which was ~100–200 mm above the viral injection. Ferrules were fixed with dental cement. At least 2 weeks were given for animal recovery and transgene expression before further experiments.
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6

Stereotaxic Injection Procedure for Mouse Brain

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All surgeries were performed under aseptic conditions. Mice (> 8 weeks old) were anesthetized with isoflurane (3.5% induction, followed by 1–2% maintenance at 1 L/min), and local anesthetic (lidocaine, 2%) was administered subcutaneously at the incision site. Analgesia (buprenorphine for pre-operative treatment, 0.1 mg/kg, intraperitoneal (i.p.); ketoprofen for post-operative treatment, 5 mg/kg i.p.) was administered for two days after surgery. After leveling, cleaning, and drying the skull, we affixed a custom-made titanium head plate to the skull with adhesive cement20 (link) (C&B Metabond, Parkell).
For all injections, the solution (6-OHDA or virus) was backfilled into a pulled glass pipette (Drummond, 5–000-1001-X), followed by mineral oil and a plunger. A small craniotomy (< 1 mm diameter) was made using a dental drill, and then the pipette assembly was mounted on the stereotaxic holder, lowered to the desired coordinate, and injected slowly (~100 nL/min) to minimize damage to the surrounding tissue (Narishige, MO-10). After each injection, we waited at least 10 minutes to allow the solution to diffuse away from the pipette tip before slowly going up to the next coordinate or retracting the pipette from the brain. Target coordinates (in mm) for the lAcbSh were the same across experiments: AP 1.1 from bregma, ML 1.7, and DV 4.2 from the pial surface.
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7

In utero AAV-mediated gene delivery

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All AAV injection in utero experiments were performed under protocols approved by the IACUC of Boston Children's Hospital (BCH). Timed pregnant CD-1 dams were obtained from Charles River Laboratories. E13.5 CD-1 dams were anaesthetized with isoflurane inhalation and the uterine horns were exposed. 1μl of AAV-GFP or AAV-Meis1 containing 1~5X10 12 gc/ml was injected into a lateral ventricle using a pulled glass pipette (Drummond Scientific Company). Analgesic medication (Meloxicam 5mg/kg) was injected subcutaneously following surgery. E16.5 embryos were harvested and drop fixed in 4% PFA before tissue processing or snap freezing for qPCR analysis.
The murine Meis1 gene was obtained from the MEIS1A-MIY (Addgene) by EcoRI digestion and ligated into a AAV-CMV-IRES-hrGFP (Agilent) vector digested with EcoRI. AAV5-GFP and AAV5-Meis1 were produced by the viral core at Boston
Children's Hospital (BCH).
Reagents used are listed in the Supplementary table 1. Constructs used are listed in the Supplementary table 2.
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8

Intracranial Virus Injection in Mice

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Virus injections were performed as described previously (19) . Briefly, mice were anaesthetized with isoflurane using stereotaxic instrument (David Kopf instruments, Tujunga, CA, USA) and scalp was incised carefully before drilling the skull for injection. Two hundred and fifty to three hundred nanoliters of intracranial injection were performed with a pulled glass pipette (Drummond Scientific, Wiretrol, Broomall, PA, USA) having 40-50 lm tip diameter. Recombinant adeno-associated virus production was conducted as described previously (33) . Cre-dependent AAV vectors rAAV2/1-EF1a-DIO-hM3D(Gq)-mCherry and rAAV2/8-FLEX-GFP were purchased from Addgene http://www.addgene.org/. rAAV2/1-EF1a-DIO-hM3D(Gq)-mCherry (2 Â 10 12 genomic copies/ml) or rAAV2/8-FLEX-GFP (10 14 genomic copies/ml) was injected at coordinates around the ARC (bregma: À1.25 mm, midline: 60.25 mm, dorsal surface À5.20 and À5.70 mm). Injection speed was set to 30 nl/min by a micromanipulator (Narishige, East Meadow, NY, USA). Following first intracranial injection at À5.70 mm dorsal surface, another intracranial injection was performed at À5.20 mm dorsal surface, allowing 10 min time for each injection. Injection pipette was slowly withdrawn and the scalp was stitched. Animals were allowed 14 days for recovery and transgene expression.
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