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6 protocols using gm08680

1

Fibroblast Reprogramming to iPSCs

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Human fibroblasts from three apparently healthy individuals (GM00038, GM08680, GM05756) were purchased from Coriell. Reprogramming was performed using the CytoTune-iPS 2.0 Sendai reprogramming kit according to the manufacturer’s instructions (Thermo Fisher Scientific). Briefly, fibroblasts were plated at 20,000 cells/cm2 (link) and cultured until they were 30–60% confluent. Cells were transduced with the Sendai reprogramming vectors at an MOI of 5:5:3 (KOS:hc-Myc:hKlf4). Cells were maintained in fibroblast media until passaged onto VN-coated plates on day 7. On day 8, medium was changed to E8 Medium and cells were cultured for additional 20 days. On day 28, colonies were picked using a 25-gauge needle to cut single colonies into 6–8 pieces and transferred onto VN-coated plates containing E8 Medium only or supplemented with Y-27632 or CEPT for 48 h. After 48 h, cells were kept in E8 Medium only. Confluency was assessed 8 days after colony picking using the Celigo Imaging Cytometer (Nexcelom Biosciences).
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2

Fibroblast Reprogramming to iPSCs

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Human fibroblasts from three apparently healthy individuals (GM00038, GM08680, GM05756) were purchased from Coriell. Reprogramming was performed using the CytoTune-iPS 2.0 Sendai reprogramming kit according to the manufacturer’s instructions (Thermo Fisher Scientific). Briefly, fibroblasts were plated at 20,000 cells/cm2 (link) and cultured until they were 30–60% confluent. Cells were transduced with the Sendai reprogramming vectors at an MOI of 5:5:3 (KOS:hc-Myc:hKlf4). Cells were maintained in fibroblast media until passaged onto VN-coated plates on day 7. On day 8, medium was changed to E8 Medium and cells were cultured for additional 20 days. On day 28, colonies were picked using a 25-gauge needle to cut single colonies into 6–8 pieces and transferred onto VN-coated plates containing E8 Medium only or supplemented with Y-27632 or CEPT for 48 h. After 48 h, cells were kept in E8 Medium only. Confluency was assessed 8 days after colony picking using the Celigo Imaging Cytometer (Nexcelom Biosciences).
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3

Culturing Healthy and NPC Fibroblasts

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Human skin fibroblast from healthy male donor (Coriell Institute #GM08680 (referred to as control)) and from NPC2 patients (Coriell Institute #GM18455) were purchased from Coriell Institute for Medical Research (NJ, USA). They were cultured in T25 culture flasks, at 37o C in an atmosphere of 5% CO2 in complete DMEM culture medium supplemented with 1% glutamax, 1% Penicillin–Streptomycin and 10% or 20% FBS respectively. Primary fibroblasts from NPC1 patients (Coriell Institute #GM03123) were cultured under same conditions, in 15% FBS in EMEM supplemented with 1% Penicillin–Streptomycin. Cells were checked daily and split with trypsin when a confluency of 90% were reached. Prior to fluorescent microscopy, cells were placed on 35 mm microscope dishes with glass bottom (P35G-1.5–50-C, MatTek) (coated with poly-D-lysine for NPC2 diseased cells) and allowed to settle for 48–72 h in their culture medium. All live cell imaging was carried out in M1 buffer containing 150 mM NaCl, 5 mM KCl, 1 mM CaCl2, 1 mM MgCl2, 5 mM glucose and 20 mM HEPES (pH 7.4) as described59 (link). All experiments on cells were carried out in accordance with ethical guidelines and safety regulations defined by the provider Coriell Cell Repositories (www.coriell.org) and the University of Southern Denmark.
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4

Fibroblast Culture and Gene Manipulation

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Human foreskin fibroblasts from male patient with DS (DS) and male diploid age-matched controls (2N) were purchased from the Coriell Institute for Medical Research (2-year-old: AG06922 and AG07095; 5-month-old: AG07096 and GM08680) and maintained according to the distributor’s protocols (www.coriell.org/). Throughout this study, fibroblasts were used below passage number 15 to keep the original character and morphology.
siRNA against human APP and negative control DsiRNA were purchased from Integrated DNA Technologies (IDT) and used as previously described (31 (link)). siRNA against human Fyn was purchased from Life Technologies Corp. Cells were transfected using Lipofectamine RNAiMAX according to the manufacturer’s protocol.
pcDNA-APP-βCTF was previously described (31 (link)). Cells were transiently transfected using Lipofectamine 2000 according to the manufacturer’s protocol.
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5

Fibroblast Culture for CDG Diagnosis

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PMM2-CDG, DPAGT1-CDG, and DPM1-CDG patients included in the study were selected by clinical findings and abnormal serum transferrin pattern analysed by isoelectrofocusing or high-performance liquid. Mutations in PMM2 were sought by Sanger sequencing and patients with non–PMM2-CDG were examined by massive parallel sequencing. DPAGT1-CDG, PMM2-CDG and DPM1-CDG patient-derived fibroblasts (Table 1 and S1 Table) were grown from skin biopsies (taken with informed consent) in minimal essential medium supplemented with 1% glutamine, 10% foetal calf serum, and antibiotics, under standard conditions. GM08680 (Coriell Institute for Medical Research, NIGMS Human Genetic Cell Repository, Camden, New Jersey) and CC2509 (Lonza, Basel, Switzerland) cell were used as healthy controls. All DPAGT1 and DMP1 patients-derived fibroblasts available in the laboratory were selected. In the case of PMM2 derived-fibroblast were included four cases compound heterozygous of a severe pathogenic variant and one destabilizing mutations [12 (link)]
COS-7 cells were grown in minimal essential medium supplemented with 1% glutamine, 5% foetal calf serum, and antibiotics; these cells were used to overexpress mutant DPAGT1 proteins in transient expression experiments (see below).
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6

Dermal Fibroblast Culture from Healthy Controls

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Dermal primary fibroblasts derived from healthy controls (GM08429, GM08680, GM03349, GM05565 and GM09503) were obtained from Coriell Institute for Medical Research (Camden, NJ). Each SWS-derived fibroblast line was obtained by the referring clinician and grown via a clinical lab service and then sent to us with consent through an approved IRB.
Fibroblasts were cultured in Dulbecco's Modified Eagle's medium (DMEM) containing 1 g/L glucose supplemented with 10% heat-inactivated fetal bovine serum (FBS) and 1% antibiotic-antimycotic (Life Technologies, Carlsbad, CA, USA).
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