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10 protocols using anti prmt5

1

Immunoblotting and Immunoprecipitation of Cell Signaling Proteins

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Cell lysis, western blotting and immunoprecipitation were carried as described previously (29 (link)). The antibodies used are: anti-RORγt (Cat No: MAB6109, R&D Systems, Inc.), anti-Foxp3 (236A/E7, Cat No:20034, Abcam), anti-Actin (Cat No: A1978, Sigma-Aldrich, Inc.), anti-Stat3 (79D7, Cat No:4904P, Cell Signaling Technology), anti-Stat5 (D2O6Y, Cat No: 94205, Cell Signaling Technology), anti-PRMT1 (Cat No: ab190892, Abcam), anti-PRMT5 (Cat No:ab109451, Abcam), anti-H4R3(me)2a (Cat No: 39705, Active Motif), anti-H4 (Cat No: 61299, Abcam), anti-Foxp3 (236A/E7, Cat No:20034, Abcam), anti-Actin (Cat No: A1978, Sigma-Aldrich, Inc.), anti-Stat3 (79D7, Cat No:4904P, Cell Signaling Technology), anti-Stat5 (D2O6Y, Cat No: 94205, Cell Signaling Technology), anti-PRMT1 (Cat No: ab190892, Abcam), anti-PRMT5 (Cat No:ab109451, Abcam), anti-H4R3(me)2a (Cat No: 39705, Active Motif), anti-H4 (Cat No: 61299, Abcam),
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2

Western Blot Analysis of Histone and Protein Modifications

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Protein extracts or histones (20 μg) were subjected to 10% or 15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, respectively then transferred to Immobilon-P membranes (Millipore). The blots were then probed for 2 hours with the primary antibody at dilutions of 1:500 (anti-symmetrical dimethylated arginine, SYM10, EMD Millipore), 1:1,000 (anti-B Raf, ab65050, Abcam) or 1:1,000 (anti-PRMT5, Abcam). The blots were then incubated with a horseradish peroxide-conjugated secondary antibody (1:5,000; Fischer Scientific) for 1.5 h. Immunoreactive proteins were detected using an enhanced chemiluminescence detection system (GE Healthcare) per the manufacturer’s instructions. Protein concentrations were determined using the Bradford protein assay reagent (Bio-Rad).
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3

Western Blot for Protein Analysis

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Cells were lysed in RIPA buffer containing protease inhibitors for 30 min on ice, followed by centrifugation at 15000 × g for 30 min. After SDS-PAGE, extracted proteins were transferred onto PVDF membranes (GE Healthcare) and probed with primary antibodies at 4°C overnight. The membranes were then incubated with secondary antibodies for 1 h, and the bands were captured through an ECL HRP substrate (Millipore). Anti-PRMT5 (Abcam, ab109451), anti-CDK4 (Santa Cruz Biotechnology, sc-260), anti-β-actin (Cell Signaling Technology, #4967), anti-β-tubulin (Cell Signaling Technology, #2146), anti-Flag M2 (Sigma-Aldrich, F3165), anti-HA (Biolegend, 901503), anti-6× His (Proteintech, 66005-1-Ig), anti-pRB S780 (Abcam, ab47763), anti-Mono-Methyl Arginine (Cell Signaling Technology, #8015) and anti-SDMA (Millipore, 07-413), anti-CCNE1 (Proteintech, 11554-1-AP), anti-CDC6 (Proteintech, 11640-1-AP) antibodies were purchased.
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4

Western Blot and Immunoprecipitation Antibodies

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The primary antibodies and reagents used for Western blot and immunoprecipitations include rabbit polyclonal anti-HBc antibodies (Dako), mouse monoclonal anti-HBc (clone Hyb3120, CosmoBio), anti-β-actin (Abcam), rabbit monoclonal anti-PRMT5 (Abcam), anti-MEP50/WDR77 (Abcam), anti-histone H3 (Abcam), anti-alpha-tubulin (Abcam), anti-phosphoserine (Abcam), anti-symmetric dimethyl arginine (SDM-R) (Cell Signaling), anti-monomethyl arginine (MM-R) (Cell Signaling), anti-HA (Santa Cruz), anti-Ubiquitin (Cell Signaling), anti-SmB/B’ (Sigma), mouse anti-Flag (Sigma-Aldrich), anti-HA magnetic beads (ThermoFisher), and anti-Flag magnetic beads (Sigma). Secondary antibodies include goat polyclonal anti-mouse horseradish peroxidase (HRP) (Sigma-Aldrich) and goat polyclonal anti-rabbit-HRP (Sigma-Aldrich). Antibodies for immunofluorescence analysis (IFA) include mouse monoclonal anti-HA antibody conjugated with FITC (Sigma-Aldrich).
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5

Quantification of PRMT5 Subcellular Localization

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Cells were seeded at a density of 5 × 105 cells/mL; at around 60% confluency, cells were treated as indicated above. Cells were washed twice with PBS, fixed with (PERM/FIX buffer from BD) and cells were stained with anti-PRMT-5 (Abcam, Cambridge, UK), overnight at 4 °C. Cells were then washed with 1× PBS and reacted with the Alexafluor®488-labeled secondary antibody (Abcam, Cambridge, UK) for 1 h at 37 °C; excess reagent was rinsed with 1× PBS. Genomic DNA was stained with 4′,6′-diamidino-2-phenylindole (DAPI) (Invitrogen, Carlsbad, CA, United States) according to manufacturer’s instructions. Slides were visualized by confocal microscopy using a Nikon Confocal Microscope (Nikon, Tokyo, Japan). PRMT5 subcellular localization (nuclear and cytoplasmic) were quantified by measuring fluorescence intensity profiles using Image J software, National Institutes of Health (NIH), USA (http://rsb.info.nih.gov/ij/index.html, accessed on 2 April 2021). A total of 30 cells per experiment were analyzed under 40× objective lens and all images were acquired using identical parameters.
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6

Comprehensive Chromatin Remodeling Antibody Panel

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The sources of the antibodies were anti-FLAG, anti-HDAC1 anti-HDAC2, anti-RbAp46/48, anti-Fibronectin, anti-Vimentin and anti-β-actin (Sigma–Aldrich); anti-DDB1, anti-MTA1, anti-SIN3A, anti-SAP180 and anti-SAP30 (Santa Cruz Biotechnology); anti-PRMT5, anti-ROC1, anti-LSD1, anti-DNMT3B, anti-HDAC5 and anti-MTA2 (Abcam); anti-EED, anti-MBD2/3 and anti-MTA3 (Millipore); anti-SUZ12 (Cell Signaling Technology); anti-WDR77 (also known as MEP50, Bethyl); anti-MTA2, anti-E-cadherin, anti-α-catenin, anti-γ-catenin, anti-N-cadherin and anti-EZH2 (BD Bioscience); anti-ING4 (Genetex), anti-SETD2 (Proteintech). Dynabeads Protein G was obtained from Invitrogen by Thermo Fisher Scientific, and protease inhibitor mixture cocktail was from Roche Applied Science. Glutathione-Sepharose 4B beads were from GE Healthcare Bio-Sciences. Short hairpin RNAs (shRNAs) were obtained from GenePharma Co Ltd (Shanghai, China).
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7

Immunostaining of CAPG and PRMT5

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The primary antibodies used were anti-CAPG (Santa Cruz Biotechnology, Inc.; Cat#: sc-166428; 1:100 dilution) and anti-PRMT5 (Abcam, Inc.; Cat#: ab109451; 1:100 dilution). The procedure and principle for the staining ratio and intensity were described previously 59 (link).
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8

Western Blot Analysis of DNA Damage Response

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Cells were washed with cold PBS, and then lysed in RIPA buffer (Cell Signaling Technology). After centrifugation at 14,000 rpm for 15 minutes at 4°C, the supernatants were collected, and the protein concentrations were measured using BCA protein assay reagent (BIO-RAD). Subsequently, equal amounts of proteins were separated in NuPAGE 4-12% Bis-Tris gradient gel (Invitrogen #NP0335), and transferred onto nitrocellulose membranes (Invitrogen #B301002). After blocking with 5% milk, the membranes were then probed at 4°C overnight with various primary antibodies: anti-γ-H2AX (Cell Signaling), anti-phospho-Chk1 (Ser345) (Cell Signaling), anti-phospho-Chk2 (Thr68) (Cell Signaling), anti-PRMT5 (Abcam), anti-RPA1 (Abcam), anti-phospho-RPA2 (S4/S8) (Bethyl Laboratories), anti-RPA2 (Ab-2) (Calbiochem), cleaved caspase-3 (Cell Signaling), and anti-β-actin (Sigma), washed with TBST (20 mM Tris, 150 mM NaCl, 0.1% Tween 20; pH 7.6), and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (Promega) at room temperature for 1 hour. Finally, after washing with TBST, the antibody-bound membranes were treated with enhanced chemiluminescent western blot detection reagents (GE Healthcare) and visualized with an x-ray film (GE Healthcare).
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9

Immunofluorescence Assay for PRMT-5

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Cells were seeded at a density of 5 × 105 cells/ml; at around 60% confluency, cells were treated and treated as indicated above. Cells were washed twice with PBS and Cells stained with anti-PRMT-5 (Abcam, UK), overnight at 4 °C. Cells were then washed with 1X PBS and reacted with the Alexafluor®488-labeled secondary antibody (Abcam, Cambridge, United Kingdom) for 1 h at 37 °C; excess reagent was rinsed with 1X PBS. Genomic DNA was stained with 4′,6′-diamidino-2-phenylindole (DAPI) (Invitrogen, Carlsbad, California, United States) according to manufacturer's instructions. Slides were visualized by confocal microscopy using a Nikon Confocal Microscope (Nikon, Tokyo, Japan).
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10

Quantitative Western Blot Analysis

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Cells were lysed in ice-cold NP-40 lysis buffer (1.0% NP-40, 150 mM of NaCl, 50 mM of Tris-Cl, pH 8.0) containing protease inhibitor cocktail tablets (Cat. No. S8830; Sigma, Germany). Protein concentration of cell lysate was quantified using the standard Bradford method (Cat. No. 500-0006; Bio-Rad, Hercules, CA, USA). 50 µg of lysate protein aliquots were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a nitrocellulose membrane (Bio-Rad, USA). 5% skimmed milk powder was used to block the membrane at room temperature for 1 h. The membrane was then washed with TBST, and incubated with the following primary antibodies (anti-PRMT-5, anti-β-catenin, anti-H4R3me2s [Symmetrical dimethylation on arginine-3 of histone H4], anti-β-actin (all from Abcam, UK), ( cyclin D1, cdk4, cdk6, caspase-3 and PARP, all from Cell Signaling Technology, USA) overnight at 4 °C. Secondary antibodies (Cell Signaling Technology, USA) were incubated with the membrane at 1:1000 dilution for 1 h at room temperature. Chemiluminescence was detected using the ECL kit (Thermo Scientific Pierce, USA). Bio-Rad Image Lab software (ChemiDoc™ Touch Gel and Western Blot Imaging System; Bio-Rad) was used to detect and quantify protein bands. Protein levels were normalized to β-actin and ratios were calculated based on the values of control (untreated) samples.
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