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4 protocols using anti rabbit hrp conjugate

1

Ceramide Signaling Pathway Characterization

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RPMI 1640 medium was purchased from Corning (NY, USA; #10-040-CV), DMEM medium from ThermoFisher Scientific Inc. (CA, USA). C16:0 ceramide-1-phosphate (#860533) was obtained from Avanti Polar Lipid (AL, USA), D-erythro-Sphingosine (#SC-3546) from Santa Cruz Biotechnology (TX, USA). Dynabeads M-270 Epoxy Co-IP Kit (#14321D) and OPTIMEM (#31985-062) were acquired from ThermoFisher Scientific Inc. (CA, USA). Fatty acid free (FAF)-BSA (#A6003), Anti-FLAG M2 Affinity Gel (#A2220) and FLAG peptide (#F3290) were purchased from Sigma-Aldrich (MO, USA, #SAB2701099) and Fugene 6 transfection reagent (#E2692) from Promega Corp. (WI, USA).
The following antibodies were used: Anti-SMPDL3b (GenWay Biotech, CA, USA, #GWB-2281D4), Anti-CERK (Sigma-Aldrich, MO, USA, #SAB2701099) and IgG (Sigma-Aldrich, MO, USA #I5381). Anti-ACER2 (#LS-C354506), Anti-SPTLC3 (#LS-C397341), Anti-S1PR1 (#LS-B6370), Anti-SMPD1 (#LS-C334919) antibodies were purchased from LifeSpan BioSciences, Inc. (WA, USA). Secondary antibodies, Anti-Rabbit HRP conjugate (#W401B) and Anti-Mouse HRP conjugate (#W402B) were purchased from Promega Corp. (WI, USA).
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2

Cardiac Protein Quantification via Western Blot

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Cell lysates were prepared from hearts in homogenization buffer (50 mM TRIS, 320 mM sucrose, 1 mM DTT, 0.1% IGEPAL CA-630, pH 7.0) containing 1% protease inhibitor cocktail (Sigma P8340) and phosphatase inhibitor (Sigma P0044). Two hearts from C57BL/6J and 1 heart from a congenital Casq2–/– mouse (7 (link)) were included as controls. Samples were separated on a 4%–20% polyacrylamide gel (Bio-Rad Mini-PROTEAN), transferred to a PVDF membrane, blocked in TBS with Tween (TBST) plus 5% milk for 1 hour at room temperature and incubated overnight at 4°C with primary antibody. Blots were washed 3 times in TBST and incubated with secondary antibody for 1 hour at room temperature, washed 3 times again in TBST, and then developed with ECL reagent (GE Healthcare) and imaged using a ChemiDoc MP (Bio-Rad). For calsequestrin 2 immunolabeling, blots were incubated with 1:2000 anti-calsequestrin2 (ab108289; Abcam) and 1:5000 anti-rabbit HRP conjugate (catalog W401B; Promega). For GAPDH, blots were incubated with 1:10,000 anti-GAPDH (catalog AM4300; ThermoFisher) and 1:5000 anti-mouse HRP conjugate (catalog 31430; Invitrogen). Full uncropped and unedited blots were provided to the reviewers.
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3

Antibody Validation for Protein Studies

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ANTI-FLAG antibody produced in mouse (clone M2, F3165, 1:3500) and Anti-HA antibody produced in rabbit (H6908, 1:1000) were purchased from MilliporeSigma (St. Louis, MO). VU101: Anti-ubiquitin Antibody (VU-0101, 1:1000) was purchased from LifeSensors (PA, USA). Anti-mouse HRP conjugate (W4021, 1:10,000) and Anti-Rabbit HRP conjugate (W4011, 1:10,000) were purchased from Promega (Madison, WI). Anti-COPI antibody was a gift from Charles Barlowe (Dartmouth Univ, 1:3000). Anti-Arf antibody (1:3000) used was reported previously (Liu et al., 2008 (link)). Anti-GST antibody (1:1000) was purchased from Vanderbilt Antibody Product Store (VAPR, Nashville, TN).
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4

E. coli Protein Fractionation and Western Blotting

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E. coli cells were fractionated into periplasmic, cytoplasmic and membrane fractions using the lysozyme/cold osmotic shock method [35 (link)]. The resulting fractions were analysed by sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS–PAGE).
Once the cytosolic and inner membrane samples had been analysed using SDS–PAGE, the proteins were transferred from acrylamide gels to PVDF membranes via a semi-dry western blotting apparatus. The membranes were blocked overnight in a solution of 5% (w/v) dried milk in PBS-T and then incubated with primary anti-TatA antibody (1:6000, in PBS-T) for 1 h before washing. Membranes were incubated with anti-rabbit-HRP conjugate (Promega, WI, U.S.A.) for 1 h at RT, and subsequently washed. Finally, immunoreactive bands were detected using ECL™ detection reagents according to the manufacturer's instructions. X-ray films were developed using an AGFA Curix 60 automatic developer as directed by the manufacturer's instructions.
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