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5 protocols using takara sybr premix ex taq kit

1

Real-Time PCR Analysis of Rat Liver RNA

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Total RNA was isolated from rat liver tissues using TRIzol reagent (Invitrogen, Inc., Carlsbad, CA, USA). Single-stranded cDNA was synthesized with the PrimeScriptTM RT Reagent kit with gDNA Eraser (TaKaRa, Lot: D413KA5332, Shiga, Otsu, Japan). The cDNA products were amplified using real-time RT-PCR and the TaKaRa SYBR Premix Ex Taq™ kit (TaKaRa, Lot: AK7103, Shiga, Otsu, Japan). Primer sequences are listed in Table 2 and analysis software (Applied Biosystems, Carlsbad, CA, USA). Data were normalized to actin mRNA. The relative quantification of mRNA expression was analyzed using the ΔΔCt method.
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2

Quantitative RT-PCR Analysis of Claudin-4 in Mice

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Total RNA was extracted from mice tissues using a TRIzol RNA extraction kit (Thermo Fisher Scientific), and reverse transcribed into complementary DNA using Prime Script RT kit (TaKaRa, Dalian, China) based on the manufacturers’ instructions. The qRT-PCR was performed using ABI 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA) and Takara SYBR Premix Extaq kit (TaKaRa, Dalian, China). Primers were synthesized by Shanghai Sangon (Shanghai, China) with the following nucleotide sequences:

claudin4/m-F, 5′-AGTCATGGTGTGCTGAGTGA-3′

claudin4/m-R, 5′- AACCCGTCCATCCACTCTAC-3′

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3

RNA Extraction and Gene Expression Analysis

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Total RNA from tissue was separated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). cDNA was synthesized from 1 μg of RNA with PrimeScript reverse transcript reagent Kit (Takara, Tokyo, Japan). Quantitative PCR was undertaken using TaKaRa SYBR premix Ex Taq kit (TaKaRa Bio Inc., Kusatsu, Shiga, Japan) on ABI PRISM 7500 (Applied Biosystems, Foster City, CA, USA). The comparative cycle threshold (Ct) method was used to quantify the expression levels, and each amplified product was adjusted to β-actin expression. The primer sequences of the genes were designed according to the sequence information from GenBank database (Table 1).
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4

Reverse Transcription and qRT-PCR Analysis

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cDNA was reverse transcribed (30?μl), and experiments were performed following the procedure recommended by TaKaRa M-MLV reverse transcriptase (Takara Bio, Inc.) product specifications. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) experiments were performed according to the recommended methods provided by the manufacturer of the TaKaRa SYBR® Premix Ex Taq kit (Takara Bio, Inc.). U6 and GAPDH were used as housekeeping genes for standardization. The primer sequences are listed in Supplementary Table 1. Data are presented as the fold change of downregulation or upregulation (fold value = 2-ΔΔCt, where ΔΔCt = (Ct of the gene of interest, treated-Ct of the housekeeping gene, treated) - (Ct of the gene of interest, control-Ct of the housekeeping gene, control), and Ct was the number of threshold cycles).
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5

siRNA Knockdown of PSPC1 in HeLa Cells

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Two sets of siRNA oligo nucleotides for the human PSPC1 gene corresponding to nucleotides 1257—1275 (siPSPC1) and negative control siRNA were synthesized by Shanghai GenePharma Co., Ltd and used for transfection. siRNAs were transfected into HeLa cells using Lipofectamine2000 (Invitrogen, Carlsbad, CA), essentially as directed by the manufacturer and using a siRNA concentration of 40 nM. In short, cells were seeded into a 6-well cell culture plate, siRNA-Lipofectamine2000 complexes were added to each well after 24 h, and the medium was changed after 6 h incubation. After 18 h incubation, the attenuation of mRNA levels was detected by real-time reverse transcriptase PCR (RT-PCR). Total RNA was isolated using Trizol Reagent (Invitrogen), and 2 µg of total RNA was used for first-strand cDNA synthesis with Super Script III Reverse Transcriptase (Invitrogen). RT-PCR was performed in 20 µl using the TakaRa SYBR Premix Ex Taq Kit (TaKaRa Biotechnology, Dalian, China) and 100 ng of input cDNA template. β-actin was used as an internal standard. Primers for PSPC1 were 5′-AGACGCTTGGAAGAACTCAGA-3′ and 5′-TTGGAGGAGGACCTTGGTTAC-3′; primers for β-actin were 5′-TGCGTGACATTAAGGAGAA-3′ and 5′-AAGGAAGGC TGGAAGAGT-3′.
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