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Bodipy

Manufactured by PerkinElmer

BODIPY is a fluorescent dye molecule that can be used as a labeling reagent in various biological and chemical applications. It has a characteristic blue-green emission spectrum and is known for its high fluorescence quantum yield and photostability. BODIPY can be attached to a wide range of biomolecules, such as proteins, nucleic acids, and lipids, to facilitate their detection and visualization.

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3 protocols using bodipy

1

PCSK9 Inhibitor Effects on LDL Uptake

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HepG2 cells were seeded at 25,000 cells/96 well. Following overnight incubation, the medium was changed to DMEM without supplements for an additional 24 h. Cells were subsequently incubated with or without PCSK9 (100 nM) and with or without PCSK9 inhibitors 5E11 (0.1–1.0 µM), evolocumab (0.1–1.0 µM) and suramin (200 µg/ml) in serum-free medium for 4 h at 37 °C before addition of 5 µg/ml DiI-LDL (Thermo Fisher Scientific) or BODIPY-LDL (Thermo Fisher Scientific) for 4 h at 37 °C. Wells were washed with PBS and cellular uptake of fluorescence was evaluated using an EnSpire Alpha Plate Reader (Perkin Elmer) at excitation/emission 552/573 nm (DiI) or 515/520 nm (BODIPY). After overnight incubation of plates at −80 °C, the number of cells/well was quantified using the CyQuant Cell Proliferation Assay (Thermo Fisher Scientific), according to the manufacturer’s protocol.
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2

Binding and Dissociation of Fluorescent LPS

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Binding and dissociation
of LPSs were performed using a previously published protocol.51 (link) Briefly, a stock solution of 100 μg/mL
of E. coli BODIPY-LPS [BODIPYFL (503/513),
Molecular Probes, Life Technologies, USA] was diluted to 10 μg/mL
in 1× phosphate-buffered saline (PBS; pH 7.4) and sonicated for
2 min every time prior to use. Two milliliters of this sonicated solution
of BODIPY-LPS was transferred to a quartz cuvette at a concentration
of 500 ng/mL. Subsequently, the respective concentrations of NCK-10
in PBS were added to it, and the fluorescence was measured using a
λS55 fluorescence spectrophotometer (PerkinElmer). The parameters
used were as follows: excitation wavelength: 485 nm; emission wavelengths:
500–700 nm; excitation slit width = 5 nm; emission slit width
= 15 nm; and temperature: 25 °C. Three independent experiments
were performed, and the data furnished are a representative image
of one experiment.
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3

Endothelial Fatty Acid Uptake Assay

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HUVECs or HCMECs were plated onto 24-well plates and pre-treated with 1 µM apelin for 24 hours in serum-free medium or subjected to APLNR knockdown for 48 hours before being incubated with 2 µM BODIPY (D3823, Life Technologies) for 90 min. Cells were washed twice with ice-cold PBS, and fluorescence was measured using a fluorescence plate reader (BioTek). To visualize the fluorescence after BODIPY uptake, the cells were fixed in 4% PFA for 10 min at room temperature and analyzed by using fluorescence microscopy (PerkinElmer UltraVIEW VoX Spinning Disk).
To evaluate the effects of apelin, APLNR, or FABP4 on FA transfer through the endothelial layer, HUVECs and HCMECs were incubated with 1 µM apelin for 24 hours or transfected with small interfering RNA (siRNA) against APLN and/or APLNR. To determine the effect of FABP4 inhibitor BMS309403 on FA uptake, cells were subjected to APLN and APLNR knockdown for 24 hours and incubated with the indicated concentrations of BMS309403 for 24 hours. Cells were then plated on Transwell inserts (0.4-µm pore size; 3413, Costar) in 24-well plates, and 2 µM BODIPY was added to the top chamber. Fluorescence was measured from the bottom chamber at the indicated time points using a fluorescence plate reader (BioTek).
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