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11 protocols using diamidino 2 phenylindole dapi

1

Immunohistochemical Assessment of Hippocampal Neuron

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Animals were anesthetized and transcardially perfused with 0.01M PBS and 4% paraformaldehyde (PFA) seven days after HI. The brains were immediately removed and post-fixed in 4% PFA. After dehydration with a sucrose gradient, 20 serial coronal sections were cut across the middle hemisphere. Sections were then washed thrice with 0.01M PBS, blocked with 5% bovine serum albumin (BSA), and used for active neuronal nuclei (NeuN) and microtubule association protein-2 (MAP2) staining. Eventually, the sections were incubated overnight at 4 °C with anti-NeuN (1:300 dilution, Abcam, ab177487) and anti-MAP2 (1:200 dilution, Proteintech,17490-1-AP) primary antibody. After three washes in 0.01M PBS, the sections were incubated with Cy3-conjugated goat anti-rabbit immunoglobulin G (IgG) (1:2000 dilution, Boster Biological Technology, BA1032) for one hour at room temperature. After three washes in 0.01M PBS, they were finally covered with diamidino-2-phenylindole (DAPI, 1:1000, Beyotime, C1002) for five minutes. For each staining, five non-overlapping digital microscopic images of the hippocampal areas were captured randomly using a fluorescence microscope (IX71, OLYMPUS, Japan), and the number of positive cells in the hippocampal CA1 area was distinguished via Image-Pro Plus 6.0.
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2

Immunofluorescence Analysis of β-Catenin in hADSCs

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Cultured hADSCs were fixed with 4% paraformaldehyde for 15 min at RT, permeabilized with 0.1% Triton X-100 for 5 min at RT, washed three times with PBS, and blocked with 5% bovine serum albumin (BSA) in TBST for 30 min. hADSCs were incubated with rabbit polyclonal antibody against β-catenin (1:200) overnight at 4°C and then washed 3 times with PBS. hADSCs were incubated with FITC-conjugated goat anti-mouse IgG (H+L) (1:200, Beyotime Biotechnology, China) for 2 h at RT and washed 3 times with PBS, and the nuclei were stained with diamidino-2-phenylindole (DAPI) (Beyotime Biotechnology, China). The intensity of immunofluorescence was analyzed by Fiji ImageJ software.
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3

Immunofluorescence Analysis of Coxsackievirus Infection

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IF staining was performed using treated SH-SY5Y cells on poly-lysine‐coated glass coverslips. Cells were washed twice with pre-cooled PBS and then fixed with 4 % paraformaldehyde for 30 min. Afterwards, cells were permeabilized with 0.2 % Triton X-100 in PBS at room temperature for 5 min, and washed twice with PBS. Non-specific binding sites were blocked by 0.5 % bovine serum albumin (BSA) for 30 min. After three further washes with PBS, cells were incubated overnight at 4 °C with anti-VP1 (For CV-A16, 1:1000 dilution; Millipore, USA) or anti-VP1 (For CV-A10, 1:1000 dilution; GeneTex, China) and anti-Caspase1 (1:100 dilution; Affinity, UAS), followed by fluorescein isothiocyanate (FITC)-conjugated donkey anti-mouse IgG and Alexa Fluor 594-conjugated donkey anti-rabbit IgG secondary antibodies (1:300 dilution; CST, USA), for 2 h at room temperature. After three final washes, the nuclei were counterstained with diamidino-2-phenylindole (DAPI; 1:1000 dilution; Beyotime, China) for 5 min, and then washed three more times with PBS. Finally, the cells were analyzed using a confocal laser scanning microscope (Leica, Germany).
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4

Visualizing Cytoskeletal Organization in HUAECs

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Human umbilical artery endothelial cells were layered on polylysine-coated glass-bottomed microwell plates (MatTek, MA, USA) and cultured for 24 h. After treatment with vehicle, RGMa, VEGF, or VEGF plus RGMa, cells were fixed for 15 min at room temperature in PBS with 3.7% formaldehyde. The cells were washed in PBS twice, blocked in 10% goat serum for 1 h, then incubated with anti-FAK (Tyr397) antibody (1:200) at 4°C overnight. After thorough washing with PBS, the cells were incubated with Alexa Fluor 555-labeled donkey anti-rabbit IgG (H + L) for 1 h at room temperature. The cells were then stained with phalloidin conjugated with FITC (10 µmol/l) for 1 h at room temperature, and further incubated with diamidino-2-phenylindole (DAPI, 1:1,000, Beyotime, Shanghai, China) for 15 min and again washed with PBS. FITC-conjugated phalloidin, Alexa Fluor 555-labeled primary anti-FAK (Tyr397) antibody, and DAPI were used to stain F-actin and nuclear DNA, respectively, to reveal the location of the cytoplasm and microvilli in the HUAECs. The staining results were imaged using a Nikon AL90 laser confocal scanning microscope (Tokyo, Japan; magnification 400×).
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5

Immunofluorescent Characterization of 3D Cell Cultures

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Briefly, 3D spheroidal cells were fixed with 8% paraformaldehyde for 12 h, embedded in OCT Cryomount, and then sectioned at 8 μm. The sections were permeabilized with 0.5% Triton X-100, blocked with 10% FBS, and then incubated with primary antibodies against α-SMA, COL1A1, COL3A1, CTGF (Cell Signaling Technology, Danvers, MA, USA) for 60 min at 37°C. All antibodies were diluted in 0.2% (w/v) bovine serum albumen in phosphate buffered saline. Sections were then probed with a Cy3-conjugated goat antimouse or antirabbit IgG secondary antibody for 30 min at 37°C. Nuclei were stained with antifade mounting medium containing diamidino-2-phenylindole (DAPI) (Beyotime Institute of Biotechnology, Shanghai, China). Images were obtained by fluorescence microscopy (model BZ 700; Keyence, Osaka, Japan).
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6

Immunofluorescence Staining of hPASMCs

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Treated hPASMCs and frozen isolated sections were fixed in 4% paraformaldehyde for 30 min, blocked with 5% bovine serum albumin (BSA) for 2 h at room temperature, and then incubated overnight at 4 °C with the following primary antibodies: antiSIK1 (dilution 1:50; Proteintech), antiYAP (dilution 1:50, Santa Cruz), antiα-SMA (dilution 1:200, Proteintech), and antiKi67 (dilution 1:200, Abcam). After several washes in PBS, the cells and sections were incubated with the following appropriate directly conjugated fluorescent secondary antibodies: fluorescein isothiocyanate (FITC)-conjugated goat antimouse immunoglobulin G (IgG) (H + L) (dilution 1:200, Servicebio), Cy3-conjugated donkey antirabbit IgG (H + L) (dilution 1:200, Servicebio) for 2 h at room temperature, and diamidino-2-phenylindole (DAPI) (dilution 1:50; Beyotime) according to the manufacturer's instructions. Images were visualized by laser scanning confocal microscopy (LSM 800; Carl Zeiss, Germany).
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7

Cyr61 Protein Localization by Immunofluorescence

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The immunofluorescence was performed on the fixed cells grown on the round glass coverslips (Thermo Fisher Scientific) in 35 mm cell culture dishes. The cells were incubated with primary antibody against Cyr61 overnight at 4°C, followed by rhodamine-conjugated anti-rabbit secondary antibodies incubation for 1 hour, and diamidino-2-phenylindole (DAPI) (Beyotime Biotechnology, Shanghai, China) as a nuclear stain. The cells were then examined under confocal fluorescence imaging microscope (TCSSP5; Leica, Mannheim, Germany).
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8

Immunofluorescence Staining of Transfected Lung Fibroblasts

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Transfected lung fibroblasts were fixed with 4% paraformaldehyde solution. After permeabilization and blocking treatment, cells were incubated with primary antibody against mouse α-ASM (1:500, # ab83354, Abcam) overnight at 4 °C. Next, sections were incubated with fluorescein isothiocyanate (FITC)-conjugated goat anti-mouse in dark. Finally, cells were stained with diamidino-2-phenylindole (DAPI; 1:1000; Beyotime, Nanjing, China) for 15 min. Data were acquired and analyzed using a fluorescence microscope (Nikon 80i, Tokyo, Japan).
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9

Immunofluorescence Staining of Cellular Markers

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NP cells attached to slides were fixed with 4% paraformaldehyde for 20 min, washed three times with PBS, permeabilized with 0.5% Triton X-100 for 15 min, blocked with 2% bovine serum albumin (BSA) for 30 min, and then incubated overnight at 4°C with primary antibodies against p16 (1 : 100, Proteintech), cleaved caspase 3 (1 : 100, CST), FAM134B (1 : 100, Proteintech), and LC3 (1 : 100; Abconal, Wuhan, China). After washed three times with TBST, cells were incubated with CoraLite488 or CoraLite594 conjugated goat anti-rabbit/mouse IgG antibody (1 : 100, Proteintech) for 1 h and labeled with diamidino-2-phenylindole (DAPI; Beyotime) for 5 min and then observed images using a fluorescence microscope (Olympus).
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10

Immunofluorescence Assay for VP1, Caspase-1 and NLRP3

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The pre-cooled PBS was used to rinse the cells in 24-well plates (2 × 104 cells/well) for 3 times and 4% paraformaldehyde was employed to fix the cells deposited in plates of 24-well. After that, cells were subjected to permeabilization with PBS containing 0.1% Triton X-100 for 10 min at 37 °C. Then, 3% BSA was added for blockading the nonspecific binding. Next, the cells were incubated with the anti-VP1 (1:1000 dilution; Millipore, USA), anti-cleaved-Caspase1 (1:100 dilution; Affinity, USA) and anti-NLRP3 antibody (1:100 dilution; Affinity, USA) overnight at 4 °C, followed by incubation with fluorescein isothiocyanate (FITC)-conjugated donkey anti-mouse IgG and Daylight 594-conjugated donkey anti-rabbit IgG secondary antibodies (1:300 dilution; CST, USA) for 1 h. Finally, PBS was adopted to rinse the cells for 3 times and diamidino-2-phenylindole (DAPI; 1:1000 dilution; Beyotime, China) was taken to stain them at 37 °C for 5 min. With the help of a confocal fluorescence microscope (Leica, Germany), the images were obtained.
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