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4 protocols using anti β catenin e 5

1

Whole-Cell Lysate Preparation and Western Blot Analysis

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The whole-cell lysates were prepared with lysis buffer containing 150 mM NaCl, 3 mM NaHCO3, 0.1% of Triton X-100 and a mixture of protease inhibitors (Roche Diagnostics, CA) plus 2 mM Na4VO4 and 5 mM NaF. The whole-cell lysates were homogenized with a Kontes’ Pellet Pestle, frozen in −80 °C for minimum 25 minutes and then separated from insoluble cell materials by centrifugation at 16,000 g in a bench-top Eppendorf centrifuge at 4 °C. Nuclear fractions were obtained as we described29 . Protein concentration was determined with the BCA system (Pierce, Rockford, IL). The Western blotting was performed as we previously described29 44 (link)60 (link). The primary antibody anti-β-catenin (E5) and anti-β-actin were purchased from Santa Cruz Biotechnology (Dallas, TX). NF-κB signaling was analyzed with NF-κB p65 antibody sampler kit (Cell Signaling, Danvers, MA). The second antibody anti-mouse IgG-HRP was purchased from Santa Cruz Biotechnology. The antibody-associated protein bands were revealed with Western blotting luminol reagent (Santa Cruz Biotechnology, Dallas, TX).
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2

ChIP Assay for Transcription Factor Binding

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Chromatin was extracted from CRC-CS cells (5 × 106) and ChIP assays were performed as previously described.31 (link) The differential binding between proteins and promoter DNA was examined by PCR. The primary Abs used were as follows: anti-β-catenin (E-5: sc-7963), anti-β-arr1(K-16: sc-9182), anti-p300 (N-15: sc-584), TCF4 (H-125: sc-13027) (Santa Cruz Biotechnology) anti-acetylated Histone H3 (Lys 27) (Millipore, Billerica, MA, USA, 07-360). The primers used were as follows: ET-1 promoter 5′-CAGCTTGCAAAGGGGAAGCG-3′ and 5′-TCCGACTTTATTCCAGCCCC-3′.
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3

Immunoblotting Analysis of Epithelial-Mesenchymal Markers

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Proteins extracted from fibroblast homogenates were separated by 10% SDS–polyacrylamide gel electrophoresis and then transferred to a 0.45 μm pure nitrocellulose membrane (Bio-Rad) by transfer buffer. The blots were blocked with milk at 5% for 1 h and incubated overnight at 4 °C with the monoclonal antibodies: anti-Human N-cadherin (1 mg/mL) (R&D system), anti-vimentin cloneV9 (1:250) (SIGMA), anti-a-actin (N-19) (1:200) (Santa Cruz), anti E-cadherin (G-10) (Santa Cruz) and anti-cytokeratin, pan (mixture) C2562 (SIGMA), anti-β-catenin (E-5) (Santa Cruz) and anti-MMP-9 (626–644) (Ab-3) (Calbiochem). Primary antibodies-bound membranes were incubated at 4 °C overnight with HRP-conjugated secondary antibody (1:4000) anti-mouse (SIGMA). Further details are reported in a previous study [19 (link)]. For detection, an ECL chemiluminescence system (Therma Scientific) was used.
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4

Western Blot Analysis of Protein Expression

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Western blotting was performed as described previously (Nakayama et al., 2020 (link)). Raw data of images of western blotting analyses are uploaded as source data for western. Anti-PRMT1 (A33), anti-CYP11A1 (D8F4F), anti-E-cadherin (4A2), anti-EpCAM (VU1D9), anti-vimentin (D21H3), anti-N-cadherin (D4R1H), anti-ZEB1 (D80D3), anti-histone H3 (D1H2), anti-β-tubulin (9F3), and anti-GAPDH (14C10) antibodies were purchased from Cell Signaling Technology (Danvers, MA). Anti-HTR2C (ab133570) and anti-DRD2 (ab85367) antibodies were purchased form Abcam (Cambridge, UK). Anti-phospho-GSK3β (Ser9) (F-2), anti-GSK3β (1F7), anti-KRT18 (DC-10), anti-KRT19 (A53-B/A2), anti-MMP1 (3B6), anti-MMP2 (8B4), anti-S100A4 (A-7), anti-luciferase (C-12), anti-ki67 (ki-67), and anti-β-catenin (E-5) antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX).
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