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6 protocols using n 3 oxo hexanoyl l homoserine lactone

1

AHL Compound Standards for Quorum Sensing

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The following AHL standards, purchased from University of Nottingham, UK were: N-3-oxo-butyryl-L-homoserine lactone (3OC4-HSL), N-3-hydroxy-butyryl-L-homoserine lactone (3OHC4-HSL), N-3-hydroxy-hexanoyl-L-homoserine lactone (3OHC6-HSL), N-3-hydroxy-octanoyl-L-homoserine lactone (3OHC8-HSL), N-3-hydroxy-decanoyl-L-homoserine lactone (3OHC10-HSL). In addition, N-butyryl-DL-homoserine lactone (C4-HSL), N-hexanoyl-L-homoserine lactone (C6-HSL), N-3-oxo-hexanoyl-L-homoserine lactone (3OC6-HSL), N-octanoyl-L-homoserine lactone (C8-HSL), N-3-oxo-octanoyl-L-homoserine lactone (3OC8-HSL), N-decanoyl-DL-homoserine lactone (C10-HSL), N-3-oxo-decanoyl-L-homoserine lactone (3OC10-HSL), N-dodecanoyl-DL-homoserine lactone (C12-HSL), N-3-oxo-dodecanoyl-L-homoserine lactone (3OC12-HSL), N-3-hydroxy-dodecanoyl-DL-homoserine lactone (3OHC12-HSL), acetonitrile, and formic acid for HPLC were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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2

Analytical Standards for AHL Quorum Sensing

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The following AHL standards were purchased from University of Nottingham, UK: N-3-oxo-butyryl-L-homoserine lactone (3-oxo-C4-HSL), N-3-hydroxy-butyryl-L-homoserine lactone (3-OH-C4-HSL), N-3-hydroxy-hexanoyl-L-homoserine lactone (3-OH-C6-HSL), N-3-hydroxy-octanoyl-L-homoserine lactone (3-OH-C8-HSL), N-3-hydroxy-decanoyl-L-homoserine lactone (3-OH-C10-HSL). Standards purchased from Sigma-Aldrich were: N-butyryl-DL-homoserine lactone (C4-HSL), N-hexanoyl-L-homoserine lactone (C6-HSL), N-3-oxo-hexanoyl-L- homoserine lactone (3-oxo-C6-HSL), N-octanoyl-L-homoserine lactone (C8-HSL), N-3-oxo-octanoyl-L-homoserine lactone (3-oxo-C8-HSL), N-decanoyl-DL-homoserine lactone (C10-HSL), N-3-oxo-decanoyl-L-homoserine lactone (3-oxo-C10-HSL), N-dodecanoyl-DL-homoserine lactone (C12-HSL), N-3-oxo-dodecanoyl-L-homoserine lactone (3-oxo-C12-HSL), and N-3-hydroxy-dodecanoyl-DL-homoserine lactone (3-OH-C12-HSL). HPLC grade acetonitrile and formic acid were purchased from Merck.
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3

Degradation of Quorum Sensing Signals by Bacillus spp.

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The AHLs degradation activity of cell-free lysates of Bacillus spp. isolates 30b, 32C, and 6 was assessed against different AHL signals using the well diffusion assay. AHL signals tested were; 100 µM C4-HSL (Cayman), 50 µM C6-HSL, 50 µM N- decanoyl-homoserine lactone (C10-HSL), 25 µM N-(3-oxohexanoyl)-L-homoserine lactone (3-oxo-C6-HSL), 25 µM N-(3-oxododecanoyl)-L-homoserine lactone (3-oxo-C10-HSL), 25 µM 3-oxo-C12-HSL (Sigma-Aldrich). The relative degradation activity was calculated for each AHL signal by calculating the residual AHL from a calibration curve constructed using different concentrations of standard AHL and their induced zone diameter using two AHLs reporter strains; Chromobacterium violaceum (C. violaceum) CV026 and A. tumafaciens KYC55, which respond to short chain and medium-to-long chain AHLs, respectively.39 (link)–42 The maximum degrading activity is defined as 100% relative degradation activity.43 (link)
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4

Bacterial Quorum Sensing Signaling Molecules

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N-Hexanoyl-L-homoserine lactone (C6-HSL), N-octanoyl-L-homoserine lactone (C8-HSL), N-decanoyl-L-homoserine lactone (C10-HSL), N-dodecanoyl-L-homoserine lactone (C12-HSL), N-(3-oxo-hexanoyl)-L-homoserine lactone (3-oxo-C6-HSL), N-(3-oxo-octanoyl)-L-homoserine lactone (3-oxo-C8-HSL), and HSL standards were purchased from Sigma. N-(3-oxo-decanoyl)-L-homoserine lactone (3-oxo-C10-HSL), N-(3-oxo-dodecanoyl)-L-homoserine lactone (3-oxo-C12-HSL), and N-(3-oxo-tetradecanoyl)-L-homoserine lactone (3-oxo-C14-HSL) were obtained from the Nottingham University in England.
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5

Bacterial Quorum Sensing Assays

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The bacterial strains used in this study are shown in Supplementary Table S1. Media supplements to AB minimal media (Clark and Maaløe, 1967 (link)) used for culturing were as follow; 0.2% tryptone, 0.4% yeast extract for Chromobacterium violaceum CV026, 0.2% tryptone, 0.1% lactate for E. coli MT102, and 0.2% tryptone, 0.1% yeast extract for P. aeruginosa MH602. Strains were grown at either 30°C (strain CV026) or 37°C (strains MT102 and MH602) with shaking at 150 rpm. N-acyl-L-homoserine lactones including N-hexanoyl-L-homoserine lactone (HHL), N-(3-oxo-hexanoyl)-L-homoserine lactone (OHHL), N-(3-oxo-dodecanoyl)-L-homoserine lactone (OdDHL; Sigma-Aldrich) were dissolved in MeOH and stored as 20 mM stocks at -20°C. Growth experiments commenced at an OD600 of 0.01 with reading taken at 30-min intervals using a multiwell plate reader (Ensight Plate Reader, PerkinElmer).
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6

Chitosan-Nanoparticle Synthesis and Characterization

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We used a high-purity grade, commercial sample of the hydrochloride salt form of CS (ProtasanUP CL113; Novamatrix, FMC-Biopolymer, Norway; Mw ~92 kDa; Ip ~2.5, as determined by GPC-MALLS-DRI; DA ~14%, as determined by 1 H NMR). GNP was purchased from Challenge Bioproducts (Taiwan). Analytical grade TPP, N-(3-oxo-hexanoyl)-L-homoserine lactone (3OC6HSL, named AHL thereafter), and other chemicals were purchased from Sigma-Aldrich (Germany). Milli-Q water was used throughout this work.
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