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219 protocols using goat anti rabbit igg h l hrp

1

Quantitative IHC analysis of katanin in NSCLC

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Totally, 265 NSCLC samples were used for IHC staining of katanin P60. In brief, the rabbit anti-p60 katanin antibody (Abcam, USA) at 1:20 dilution and goat anti-rabbit IgG H&L (HRP) (Abcam, USA) at 1:50,000 dilution were used as primary antibody and secondary antibody, respectively, in the IHC staining. All IHC procedures were performed as described in a previous study [13 (link)]. Finally, the expression of katanin P60 in tissue specimen was assessed by IHC score, which was obtained using a semi-quantitative scoring method as previously described [14 (link)]. The total IHC score was ranging from 0 to 12. Katanin P60-high expression was defined as the IHC score > 3 in tumor slide, and katanin P60-low expression was defined as IHC score ≤ 3 in tumor slide. Additionally, katanin P60-high expression was further classified as high+ (IHC score 4–6), high++ (IHC score 7–9), and high+++ (IHC score 10–12) [15 (link)]. In addition, we detected 40 out of 265 NSCLC tissues for the expression of katanin P80. The detailed procedure of katanin P80 detection was identical to that of katanin P60, while the antibodies used were (primary antibody, rabbit anti-p80 katanin antibody at 1:1000 dilution (Abcam, UK); secondary antibody, goat anti-rabbit IgG H&L (HRP) (Abcam, USA) at 1:50,000 dilution).
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2

Western Blot and Immunofluorescence Antibody Validation

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The following commercially available antibodies were used at the indicated concentrations for western blot: Anti‐ZFP207 (Santa Cruz Biotechnology, sc‐271943, 1:500), Anti–β‐ACTIN (Sigma‐Aldrich, A5441, 1:2,500), Anti‐OCT3/4 (Santa Cruz Biotechnology, sc8628, 1:2,500), Anti‐Nanog (Santa Cruz Biotechnology, sc‐374001, 1:1,000), Anti‐Sox2 (Santa Cruz Biotechnology, sc‐398254, 1:1,000), Anti‐SFRS11 antibody (Abcam, ab196801, 1:2,000), Goat Anti‐Rabbit IgG H&L (HRP) (Abcam, ab6721, 1:5,000), Goat Anti‐Mouse IgG H&L (HRP) (Abcam, 1:1,000, ab6789), Rabbit Anti‐Goat IgG H&L (HRP) (Abcam, 1:5,000, ab6741), and Rabbit Anti‐ goat IgG (HRP) (Abcam, ab6771, 1:5,000), Anti‐Flag (Sigma, F3165, 1:1,000). In all western blots, β‐ACTIN was used as a loading control (Sigma, A5441, 1:2,500). For IF staining, we used Anti‐SSEA1 (Invitrogen, MA5‐17042, 1:250), Anti‐Nestin (Abcam, ab81462, 1:50), Anti‐Tuj1 (Abcam, ab18207, 1:200), Anti‐Caspase 3 Antibody, active (cleaved) form (MERK, AB3623, 1:100), Goat anti‐mouse IgG AF488 (Invitrogen, A11029, 1:1,000), Goat anti‐rabbit IgG AF568 (Invitrogen, A11011, 1:1,000), Anti‐Mouse IgG HRP (Abcam, ab6789, 1:1,000), and Donkey Anti‐Goat IgG AF594 (Invitrogen, A11058, 1:250).
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3

Antibody Panel for Stem Cell Characterization

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The following commercially available antibodies were used at the indicated concentrations for western blot: Anti-ZFP207 (Santa Cruz Biotechnology, sc-271943, 1:500), anti-β-ACTIN (Sigma-Aldrich, A5441, 1:2500), Anti-LAMIN A/C (Abcam ab108922), Anti-OCT3/4 (Santa Cruz Biotechnology, sc8628, 1:2500), Goat Anti-Rabbit IgG H&L (HRP) (Abcam, ab6721, 1:5000), Goat Anti-Mouse IgG H&L (HRP) (Abcam, 1:1000, ab6789), Rabbit Anti-Goat IgG H&L (HRP) (Abcam, 1:5000, ab6741), and Rabbit Anti-goat IgG (HRP) (Abcam, ab6771, 1:5000). For IF staining, we used Anti-SSEA1 (ThermoFisher Scientific, MA5-17042, 1:250), Anti-Nestin (Abcam, ab6142, 1:50), Anti-Tuj1 (Abcam, ab18207, 1:200), Anti-OCT3/4 (Santa Cruz Biotechnology, sc8628, 1:2500), Nucleolin (Abcam, ab50279, 1:130), Goat anti-mouse IgG AF488 (ThermoFisher Scientific, A11029, 1:1000), Goat anti-rabbit IgG AF568 (ThermoFisher Scientific, A11011, 1:1000), Anti-Mouse IgG HRP (Abcam, ab6789, 1:1000), and Donkey Anti-Goat IgG AF594 (ThermoFisher Scientific, A11058, 1:250).
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4

Western Blot Analysis of CXCL12 Protein

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RIPA lysis buffer containing protease inhibitor (Beyotime Biotechnology, Shanghai, China) was used to lyse the GC cells at 4°C, and centrifuged at 12,000 r/min for 5 min, with the supernatant collected as the whole protein extract. The BCA protein quantification kit (Beyotime Biotechnology, Shanghai, China) was employed to determine the protein concentration. Next, the protein samples were mixed with loading buffer, and the proteins were denatured in boiling water for 5 min. The protein samples were dissolved via sodium dodecyl sulfate polyacrylamide gel electrophoresis, then transferred to polyvinylidene fluoride (PVDF) membrane, which was then blocked by 5% skimmed milk for 2 h at ambient temperature. Rabbit anti-CXCL12 antibody (cell signaling technology, 3530, 1:1000) and rabbit anti-β-actin antibody (Abcam, ab8227, 1:1000) were loaded and the membrane was incubated overnight at 4°C. Next, the membrane was washed with tris buffered saline tween (TBST), and then incubated with goat anti-rabbit IgG H&L (HRP) (Abcam, ab205718,1:2000) for 1 h. After the PVDF membrane was washed in TBST, the protein bands were developed by a high-sensitivity ECL chemiluminescence kit (Beyotime, Shanghai, China).
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5

Immunostaining Protocol for Tissue Microarray Analysis

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Tissue microarray (TMA) slides were subjected to the following procedures: first, dewaxing with xylene, followed by rehydration through a graded ethanol series. Endogenous peroxidase activity was blocked using 3% hydrogen peroxide (Sinopharm Chemical Reagent Co., China, #73113760) for 10 min. The slides were then rinsed in PBS, underwent hot antigen repairing, and were subsequently washed with PBS. Next, 5% BSA (Sigma, Shanghai, China, # B2064) was added to each slide and incubated at room temperature for 20 min. Primary antibodies were then added to the slides in a volume of 100 μL each: COQ2 (Sino Biological, Rabbit anti-human mAb, 1:100, 206810-T08), MPC1 (SAB, Rabbit anti-human mAb, 1:200, #42898), and ADAMTS13 (SAB, Rabbit anti-human mAb, 1:150, #49953). The slides were incubated overnight at 4°C. The following day, the slides were rinsed with PBS and incubated with a labeled secondary antibody (Abcam, Goat anti-rabbit IgG H&L (HRP), 1:2000, ab205718) at 37°C for 30 min. After rinsing again with PBS, each section was treated with 100ul try-488 Tyramine Conversion Reagent (runnerbio, Bry-try488) and incubated for 10–30 min at room temperature. Finally, the sections were mounted with anti-fluorescence quenching sealer containing DAPI (Beyotime Biotechnology, China, P0131).
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6

Quantitative Western Blot Analysis of B7-H3

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Total protein was extracted from each sample, separated on 10% SDS-PAGE, and transferred to PVDF membranes. The membranes were then blocked with 5% skimmed milk powder in TBST for 2 h and immunoblotted with anti-B7–H3 (1:500, GTX34211, GeneTex, Inc., Texas, USA) and anti-β-actin (1:1000, GTX109639, GeneTex, Inc.) at 4 °C overnight. Afterward, the membrane was incubated with goat anti-rabbit IgG H&L (HRP) (Abcam, Cambridge, UK, ab6721, 1:2000) at 37 °C for 2 h. The proteins were visualized using enhanced chemiluminescence reagent (Thermo, USA), and the images were processed using Quantity One 4.4.0 software.
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7

Protein Expression Analysis by Western Blot

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Initially, a radio-immunoprecipitation assay (RIPA) lysis buffering solution (Beyotime, Shanghai, China) was applied to abstract proteins. Following the separation of proteins by sodium salt-polyacrylamide gel electrophoresis, target proteins were electrophoretically moved to nitrocellulose films, blocked via 5% milk-TBST for 2 h under room temperature. Subsequently, they were washed three times in TBST buffering solution and cultivated with the first anti-substances, viz., COL5A1, COL1A1, E-cadherin, N-cadherin, snail, GADPH rabbit polyclonal antibody (Proteintech, USA), vimentin, and vinculin mouse polyclonal antibody (Proteintech, USA) at 4°C overnight. Subsequently, the films were washed three times in TBST again, each for 10 min. Goat anti-rabbit IgG H&L (HRP) and goat anti-mouse IgG H&L (HRP) (Abcam, USA) were added then for cultivation. Afterwards, the membranes were cleaned in TBST as per the steps mentioned above to analyze relative protein expression with Image-Pro Plus software 6.0.
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8

Quantification and Characterization of Brain Proteins

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Total proteins from brain tissues with the hippocampus were extracted with a Total Protein Extraction Kit (BC3711, Solarbio) and quantified by the BCA protein quantification kit (ab102536, Abcam, Cambridge, UK) in line with the operation manual. 10 %SDS-PAGE was used to dissolve protein samples and electrically transfer them to PVDF membranes. For the block, the membrane was treated for 1 h at room temperature with 3% bovine serum albumin (BSA) and then primed overnight at 4 °C with primary antibodies. As a next step, the membrane was washed three times and hatched for 1 hour at 37 °C with appropriate secondary antibodies. An ECL chemiluminescence kit (WBULS0500; EMD Millipore) was used to visualize the bands. The primary antibodies were NLRP3 (1:1000), Iba-1 (1:10,000), IL-18 (1:500), IL-1β (1:1000), and caspase1 (1:1000), and the second antibody was Goat anti-rabbit IgG H&L (HRP) (1:20,000), all of which were purchased from Abcam.
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9

NLRP3 Inflammasome Activation in Osteoarthritis

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Vanillic acid was purchased from Yuanye Bio-Technology Co., Ltd. (Shanghai, China). The primers were supplied by Sangon Biotech (Shanghai, China). The enzyme-linked immunosorbent assay (ELISA) kits for IL-1β and IL-18 were supplied by Invitrogen (Life Technologies Corp. California, United States). Fetal bovine serum (FBS), bovine serum albumin (BSA), Dulbecco’s Modified Eagle’s Medium (DMEM), TRIzol, and 0.25% trypsin-ethylenediaminetetraacetic acid (trypsin-EDTA) were purchased from Gibco (Life Technologies Corp., California, United States). Cell Counting Kit-8 (CCK-8) was purchased from Dojindo (Kumamoto, Japan). Antibodies against NLRP3, ASC, caspase-1, CGRP, NGF, TrkA, and type I collagen were purchased from Abcam (Cambridge, United Kingdom). Monoidoacetate acid, type I collagenase, and dimethylsulfoxide (DMSO) were all obtained from Sigma (St Louis, USA). All other chemicals were of reagent grade. Goat anti-rabbit IgG H&L (HRP) and Picro Sirius Red Stain kit were also supplied by Abcam (Cambridge, United Kingdom).
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10

Immunohistochemical Analysis of Coronin 1c and F-actin

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Paraffin sections of the surgically resected tumor tissues and para-cancerous tissues were prepared according to conventional method, and the expression of Coronin 1c and F-actin protein was detected by immunohistochemical staining according to the instructions of the VECTASTAIN® Elite® ABC Kit (Vector Laboratories, USA). Firstly, the paraffin sections were placed at 60°C for 2 h, deparaffinized, hydrated with xylene and ethanol, and washed with PBS and double-distilled water for staining retrieval nuclear antigen. Secondly, the cells were stained with Coronin 1C antibody (D-9) (Santa Cruz, USA) and F-actin antibody (Abcam, UK) as a primary antibody (PBS instead of primary antibody as a negative control) overnight at 4°C with goat anti-rabbit IgG H & L (HRP) (Abcam, UK) for 2 h. Finally, 5 fields were selected for each section. Results of immunohistochemistry were evaluated according to the method of Yueming Zhang [13 ]. Coronin 1c protein localized in the cytoplasm and F-actin protein was present on the cell membrane. A score more than 4 was considered to be high expression in the specimen.
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