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115 protocols using cd105

1

Isolation and Characterization of Rat BMSCs

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BMSCs were flushed from the femurs and tibiae of SD rats with α-minimum essential medium (α-MEM; Thermo Fisher Scientific, Waltham, MA, USA) containing 20% fetal bovine serum (FBS; Gibco, Grand Island, NY, USA). Cells were collected and seeded in flasks with α-MEM supplemented with 10% FBS and incubated at 37 °C in a humidified atmosphere of 5% CO2. The medium was changed every 3 days. To identify the cell phenotype, flow cytometry analysis was performed to examine cell surface markers CD73, CD105, CD90, and CD45 (CD73, eBioscience, 11-0739-41; CD105, eBioscience, 12-1051-81; CD90, eBioscience, 11-0900-81; CD45, eBioscience, 11-0460-82, respectively) according to the recommendation of the International Society for Cellular Therapy [18 (link)]. After 2–3 passages, BMSCs negative for CD45 and positive for CD73, CD105, and CD90 were used.
H9C2 rat cardiomyoblasts were purchased from the Cell Bank of Chinese Scientific Academy (Shanghai, China) and maintained in Dulbecco’s modified Eagle’s medium (DMEM; Gibco, Grand Island, NY, USA) supplemented with 10% FBS.
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2

Immunophenotyping and Differentiation of Mesenchymal Stem Cells

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The standard immunohistochemical test was considered positive when the
fluorescence was high (≥ 50%), medium (≥ 15 < 50%) or low (≥ 5 < 15%) and
negative when the mean fluorescence intensity was very low (< 5%). The
positive pattern antibodies were CD71 (FITC mouse anti-rat/BD Pharmigen, San
Diego, USA), CD73 (Purified mouse anti-rat/BD Pharmigen, San Diego, USA), CD90
(FITC mouse anti-rat/BD Pharmigen, San Diego, USA), CD105 (PE mouse
anti-rat/Life Technology, Carlsbad, CA) and CD106 (Purified mouse anti-rat/BD
Pharmigen, San Diego, USA). The negative pattern antibodies were CD31 (mouse PE
anti-rat/BD Pharmigen, San Diego, USA), CD34 (rabbit FITC anti-rat/Biorbyt,
Saint Louis, USA), CD40 (FITC hamster anti-rat/BD Pharmigen, Saint Louis, USA),
CD44 (RPE mouse anti-rat/AbD Serotec, Kidlington, UK), CD45 (FITC mouse
anti-rat/BD Pharmigen, Saint Louis, USA) and CD11b (Biotin mouse anti-rat/BD
Pharmigen, Saint Luis, USA).
A random sample of mesenchymal stem cells was cultured for differentiation in the
adipogenic, osteogenic and chondrogenic lines. This culture was performed only
to confirm the ability of the cells to differentiate but not to be used in the
experiment. The culture was performed according to a pre-established protocol in
the Molecular Biology and Cell Engineering Laboratory for mesenchymal stem cells
obtained from the adipose tissue. Evaluations were performed in a blind way.
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3

Characterization of Stromal Cell Purity

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Purity, identity and viability of stromal cells were characterized by flow cytometry as previously described39 (link). In brief, 5 × 105 cells at passage 1 were resuspended in 50 µL phosphate buffered saline (PBS, Sigma Aldrich). Cells were mixed with 0.5 µL viability dye (Fixable Viability Dye eFluor™ 520, eBioscience, Thermo Fisher Scientifics, Waltham, MA, USA) and antibody mastermix for CD73, CD19, CD14, CD34, CD45, HLA-DR (all Becton Dickinson BD Biosciences, Franklin Lakes, NJ, USA), CD90 (Beckman Coulter, Brea, CA, USA) and CD105 (Life Technologies Corporation, Frederick, MD, USA). For determination of F-heparin internalization, 1 × 103 cells per cm2 were seeded. After 48 hours, cells were incubated for three hours with medium supplemented with 10% pHPL either without heparin, with 2 IU/ml unlabeled heparin (Biochrom) or with 2 IU/ml fluoresceinamine-labeled sodium heparin (F-heparin, PG Research, Tokyo, Japan). After washing cells twice with PBS, 2 × 105 cells were resuspended in 100 µL 7AAD viability dye mastermix (BD). All cells were measured immediately (BD LSRFortessa™A) and results were analyzed with Kaluza Analysis Software (Beckman Coulter).
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4

Phenotypic Characterization of Bone Marrow-Derived Mesenchymal Stem Cells

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APCs were stained for surface antigen expression using combinations of the following antibodies to confirm typical phenotype: CD105 (Life Technologies), CD90, CD73, PDGFRβ (Biolegend), CD44 (eBioscience), CD31 (BD Biosciences), CD34, and CD45 (Miltenyi)5 (link), 10 (link). Analysis was performed using a FACS Canto II flow cytometer and FACS Diva software (both BD Biosciences). BM-MSCs antigenic characterization was also routinely performed by flow cytometry. Primers and antibodies are listed in Supplementary Tables VI and VII, respectively.
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5

Directed Differentiation of Engineered Stem Cells

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In vitro differentiation of H1-RB1(E16)−/+ cells to HPCs, MSCs, and NPCs was performed by well-defined differentiation protocols described previously (Chambers et al., 2009 (link); Qin et al., 2016 (link); Zhao et al., 2015 (link)). For cell characterization, SOX17 (R&D Systems) and HNF4A (Cell Signaling Technology) were used for HPCs, CD105 (Thermo Fisher Scientific) and CD73 (BD Biosciences) were used for MSCs, and PAX6 (BioLegend) and NESTIN (BioLegend) were used for NPCs.
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6

Quantifying Scaffold Vascularization Gene Expression

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To quantify gene expression in the scaffolds, half of each individual scaffold at day 63 was processed for RT-PCR. Briefly, total RNA was isolated using Trizol according to manufacturer’s protocol (Invitrogen; Thermo Scientific, Landsmeer, The Netherlands). The RNA concentration was determined using a NanoDrop 1000 spectrophotometer (NanoDrop products, Wilmington, NC, USA). cDNA was reverse transcribed using a SuperScript® III Reverse Transcriptase kit according to the instructions of the manufacturer (Life technologies). RT-PCR was conducted using ViiATM Real Time PCR system (Life technologies) with primer and probe sets (TaqMan Gene Expression Assays) for several vascularization genes (CD31, VEGFa, VE-cadherin, CD105 (endoglin), angiopoietin 1 and 2) purchased from Thermo Scientific (Table 1) and qPCR Mastermix Plus (Eurogentec, Seraing, Belgium). Reactions were performed at 50 °C for 2 min, 95 °C for 10 min, 95 °C for 15 s, and 60 °C for 60 s, repeating these last two steps for 40 cycles. Delta Ct values were calculated and normalized against the expression of the housekeeping gene GAPDH. Delta Ct values were used to determine the fold change of the H2S treated groups compared to the control group.
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7

Adipose-Derived Stem Cell Profiling

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ADSCs (2.0 × 106) were washed twice with phosphate-buffered saline (PBS) (Santa Cruz Bio., Dallas, TX, USA) and added to 100 μL of FACS buffer and 5 μL of antibodies targeting each of the following: CD31 (Thermo Fisher Scientific Inc.), CD34 (BioLegend, San Diego, CA, USA), CD45 (Thermo Fisher Scientific Inc.), CD90 (BioLegend), CD105 (Thermo Fisher Scientific Inc.), and CD146 (Thermo Fisher Scientific Inc.). After 30 min in a dark room at room temperature, the cells were analyzed using a FACSVerse and BD FACSuite software (BD Biosciences, San Jose, CA, USA).
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8

Flow Cytometry Characterization of BMSCs

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To confirm the identity of isolated cells, the adherent isolated cells, considered BMSCs, were tested for the expression of membrane antigen markers (cluster of differentiation (CD)), using cells of passage 2: CD105 (Thermo Fisher, MA, USA), CD73 (BD Biosciences, San Diego, CA, USA), and CD90 (BD Biosciences, San Diego, CA, USA) markers, and negative expression markers CD45 (BD Biosciences, San Diego, CA, USA) hematopoietic markers using specific antihuman mouse monoclonal antibodies (CD105-AlexaFluor 488,CD73-APC,CD90-FITC,CD45-PE). Isotype controls for each fluorochrome (AlexaFluor 488, APC, FITC, and PE) were anti-mouse immunoglobulin (IgGa, k). Data were acquired with a BD LSRFortessa X-20 cytometer (Bio-Rad Laboratories Inc., Hercules, CA, USA).
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9

Directed Differentiation of Engineered Stem Cells

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In vitro differentiation of H1-RB1(E16)−/+ cells to HPCs, MSCs, and NPCs was performed by well-defined differentiation protocols described previously (Chambers et al., 2009 (link); Qin et al., 2016 (link); Zhao et al., 2015 (link)). For cell characterization, SOX17 (R&D Systems) and HNF4A (Cell Signaling Technology) were used for HPCs, CD105 (Thermo Fisher Scientific) and CD73 (BD Biosciences) were used for MSCs, and PAX6 (BioLegend) and NESTIN (BioLegend) were used for NPCs.
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10

In Situ MSC and ANC Analysis

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For analysis of in situ MSCs, ANCs from the hindlimbs of Prx1-Cre;tdTomato mice were collected and stained with a FITC anti-mouse TNFα antibody (BioLegend, USA) at 1:100 or a PerCP anti-mouse p-mTOR antibody (Thermo Fisher Scientific, USA) at 1:100 for 60 min on ice using Intracellular Staining Permeabilization Wash Buffer (BioLegend, USA). For analysis of MSC endocytosis, MSCs were collected after FITC-labeled TNFα and pro-TNFα treatments and fixed in 2% PFA. For analysis of MSC surface markers, cultured MSCs were collected and stained with PE-conjugated antibodies against CD73 (Thermo Fisher Scientific, USA), CD90 (BioLegend, USA), CD105 (Thermo Fisher Scientific, USA), CD146 (Thermo Fisher Scientific, USA), CD166 (Thermo Fisher Scientific, USA), Stem cell antigen 1 (Sca1; BD Biosciences, USA), and CD45 (Thermo Fisher Scientific, USA) and a PerCP-conjugated antibody against CD34 (BioLegend, USA) at 1:100 for 60 min on ice. All samples were analyzed using FACSCalibur with CellQuest software (BD Bioscience, USA).
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