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9 protocols using szh10 microscope

1

In Situ Hybridization for Proliferation Markers

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Antisense RNA probes labeled with either digoxigenin-11 rUTP or fluorescein-12 rUTP (Roche) were synthesized as described by Sive et al. (2000) for the following genes: tubb2b (linearized with BamHI, transcribed with T7) (Klein et al., 2002 (link)), sox2 (linearized with EcoRV, transcribed with T7) (Huyck et al., 2015 (link)), and pcna (linearized with XhoI, transcribed with T7) (Huyck et al., 2015 (link)). PCNA in situ hybridization (ISH) was selected based on reports in the literature suggesting that it represents an effective and accurate tool for assessing dynamic changes in proliferation (Muskhelishvili et al., 2003 (link); Kohler et al., 2005 (link)). Whole-mount chromogenic in situ hybridization (ISH) using nitrobluetetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/ BCIP) alkaline phosphatase substrates was performed as described by Sive et al. with minor modifications (Sive et al., 2000 ). Embryos were photographed using an Olympus SZH10 microscope and an Olympus DP71 camera or Nikon SMZ800N microscope and Nikon DSi-R2 camera. Global image adjustments were made using Adobe Photoshop CC to correct brightness, contrast, and color balance.
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2

In Situ Hybridization for Proliferation Markers

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Antisense RNA probes labeled with either digoxigenin-11 rUTP or fluorescein-12 rUTP (Roche) were synthesized as described by Sive et al. (2000) for the following genes: tubb2b (linearized with BamHI, transcribed with T7) (Klein et al., 2002 (link)), sox2 (linearized with EcoRV, transcribed with T7) (Huyck et al., 2015 (link)), and pcna (linearized with XhoI, transcribed with T7) (Huyck et al., 2015 (link)). PCNA in situ hybridization (ISH) was selected based on reports in the literature suggesting that it represents an effective and accurate tool for assessing dynamic changes in proliferation (Muskhelishvili et al., 2003 (link); Kohler et al., 2005 (link)). Whole-mount chromogenic in situ hybridization (ISH) using nitrobluetetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/ BCIP) alkaline phosphatase substrates was performed as described by Sive et al. with minor modifications (Sive et al., 2000 ). Embryos were photographed using an Olympus SZH10 microscope and an Olympus DP71 camera or Nikon SMZ800N microscope and Nikon DSi-R2 camera. Global image adjustments were made using Adobe Photoshop CC to correct brightness, contrast, and color balance.
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3

Quantification of Cellular Mineralization

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Cells were fixed with ice-cold ethanol, washed with Aqdest, and incubated with 40 mM Alizarin red solution (Sigma Aldrich, pH 4.1) for 20 min at RT. After thorough washing, the air-dried specimens were evaluated with a SZH10 microscope (Olympus, Münster, Germany) equipped with a CCD Colour view III camera and the resulting images were taken and analyzed using the CellSens software version 1.5 (both Olympus, Münster, Germany). For quantification, Alizarin red was extracted with 10% acetic acid for 30 min at RT. The cell layer was scraped, and the solution was covered with mineral oil (Sigma Aldrich) and incubated for 10 min at 85 °C. The supernatant was transferred into microplates, the absorbance was read at 420 nm in triplicates, and data were collected and analyzed using the Magellan v6.2 software (Tecan, Crailsheim, Austria).
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4

Quantifying Lung Fibrosis and Smooth Muscle

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Right lungs were inflated using formaldehyde and fixed for 24–48 hours before being moved to 70% ethanol. The lungs were sectioned and subjected to Masson’s trichrome staining and immunostaining for smooth muscle α-actin (α-SMA) or fibronectin. Secondary antibodies conjugated to either HRP (immunohistochemical images) or Alexafluor-488 (for quantitation of α-SMA) were utilized. The modified Ashcroft scale was used to quantify fibrosis, as previously described [17 (link)]. Quantitation of α-SMA immunostaining was performed by taking 10 images at 20X magnification per sample, using identical exposure times and thresholds on an Olympus 1X71 fluorescent microscope and Q imaging Retiga 2000R camera. ImageJ was used to measure integrated density of the fluorescent signal [18 (link)]. Quantitation of fibronectin histology was performed by taking a 2X magnification image of each sample, using identical exposure times and thresholds on an Olympus SZH10 microscope and Olympus DP70 camera. ImageJ Immunohistochemistry Toolbox plugin was utilized to isolate the brown stain [19 ]. The resulting image was inverted, the lung was outlined and integrated density measured. Integrated density measurement was divided by the total area of the lung in order to account for differences in lung sizes.
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5

Quantifying Tibial Periosteal Bone Formation

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In the exercised and control subjects, bone formation on the tibial periosteal surface during the treatment period was quantified on midshaft transverse cross sections (100-µm thickness) using an Olympus SZH-10 microscope (Olympus America, Melville, NY) with epifluorescence (Fig. 1). Using ImageJ, digitized cross sections were divided into 16 equal-angle sectors positioned about the experimentally determined neutral axis, with the axis orthogonal to the neutral axis projected through the area centroid [8] (link). Bone area added in each sector during the treatment period was measured from the calcein line to the periosteal surface. Bone areas were standardized by body mass0.67, calculated as mean mass during the final 3 weeks of the experiment. Two-sample Wilcoxon tests were performed to evaluate differences in bone formation between exercised and control animals.
Additional details of the experimental and analytical methods are provided elsewhere [8] (link), [11] (link). Raw bone strain and histological data are available in [8] (link) and Dataset S1, respectively.
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6

Quantification of Colony-Forming Units

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For CFU assays, cells were seeded in limiting dilution, i.e., 2 cells/cm2, incubated for 14 days, fixed with 4% formaldehyde, and stained with 0.1% Azur II (Sigma Aldrich, Taufkirchen, Germany) dissolved in Aqdest for 20 min at room temperature (RT), air dried, and photographed with a SZH10 microscope (Olympus, Münster, Germany) equipped with a CCD Colour view III camera (Olympus, Münster, Germany). The resulting images were taken using the Cell Olympus cell Sens software version 1.5 (Olympus, Münster, Germany). Images were analyzed using the ImageJ plugin “analyze particles” following threshold adjustment. Stained colonies of ≥50 cell were scored as colony forming (CFU-F) and counted. CFU-F efficiency was calculated as follows:
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7

Ultrastructural Analysis of Trichogramma pretiosum Antennae

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T. pretiosum adults were preserved in 3% glutaraldehyde in 0.025 M pH 7.0 phosphate buffer for 24 h and then used for fixation with a Pelco Biowave processor (Ted Pella Inc., Redding, CA, USA). A critical point drying apparatus (Polaron E3000, Quorum Technologies, Lewes, UK) was used in the preparation process at the critical point of CO2 = 31.1 °C and 1071 psi. Dried samples were mounted on SEM stubs under a SZH10 microscope (Olympus Corporation, Tokyo, Japan) and then sputtered with 10 nm gold using a Polaron Sputter coater SC 7640 (Quorum Technologies, Lewes, UK) with argon gas (pressure < 1 × 102 mbar, voltage = 1 kV). Samples were examined and photographed under a Zeiss 1555 VP-FESEM SEM instrument (ZEISS Australia, North Ryde, Australia) operated at 10 kV, high current, 10–12 mm working distance, and 30 µm aperture. Sample preparation and examination were conducted at the Centre for Microscopy, Characterization, and Analysis (CMCA) at the University of Western Australia. Five male and five female antennae were observed under SEM (n = 5).
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8

TTC Metabolic Assay for Cell Viability

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The viability test with 2,3,5-triphenyltetrazolium chloride (TTC) was used to obtain insights into metabolic processes. The TTC metabolic assay exploits enzymatic processes that occur in all living cells and organisms, such as oxidation-reduction reactions during photosynthesis or respiration. In this assay, the clusters of ESEs were incubated in a colourless 1% (w/w) solution of 2,3,5-triphenyltetrazolium chloride (TTC) for 24 hours. The TTC is taken up by the live cells and reduced to a water-insoluble red formazan by oxidative enzymes. Dead cells remain colourless after incubation with TTC. After 24 hours of incubation at room temperature, the results were photographed using an Olympus (SZH 10) microscope connected to an Olympus (4040 Zoom) digital camera.
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9

Quantitative Alizarin Red Staining

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Cells were incubated with 40 mM Alizarin red solution (Sigma Aldrich, pH 4.1) for 20 min at RT. After thorough washing, the air-dried specimens were evaluated with a SZH10 microscope (Olympus, Münster, Germany) equipped with a CCD Colour view III camera, and images were taken and analyzed using the Cell* software (both Olympus). For quantification, Alizarin red was extracted with 10 % acetic acid (30 min, RT). The solution was incubated for 10 min at 85 °C and the absorbance of the supernatant was read at 420 nm in triplicate. Data were collected and analyzed using the Magellan v6.2 software (Tecan, Crailsheim, Austria).
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