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10 protocols using gsk 3β 27c10

1

Quantification of c-MYC and FBXW7 Stability

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After release from quiescence in the presence of DMSO or GUTK, cells were harvested and treated with ice-cold RIPA lysis buffer supplemented with a protease inhibitor cocktail. Protein quantification, electrophoresis and western blotting were performed as previously described.42 (link) Antibodies (human specific) used were c-MYC (Abcam, Epitomics, Cambridge, UK, #1472-1), S62-phospho-c-MYC (ab51156), T58-phospho-c-MYC (ab28842) and GAPDH (ab128915) were obtained from Abcam Company (Cambridge, UK). Additional antibodies were phospho-Rb (Ser807/811) (#9308), ERK1/2 (137F5) (#4695), phospho-ERK1/2 (Thr202/Tyr204) (#4370), GSK3β (27C10) (#9315) and phospho-GSK3β (Ser 9) (#9323) purchased from Cell Signaling Technology (Danvers, MA, USA), FBXW7 (A301-721A) were obtained from Bethyl Laboratories (Montgomery, TX, USA) and α-tubulin (sc-5286) from Santa Cruz Biotechnology (Dallas, CA, USA).
Immunoblot images were exported in the format of tagged image file and quantified using ImageJ 1.46 software (National Institute of Health). After normalization to loading control, the immunoblot bands of c-MYC and FBXW7 were plotted to determine the half-life. The 50% decrease in protein intensity based on the Y-axis was used to determine the corresponding value on the X-axis, which by definition is the time required for the proteins of interest to decrease to the half of the baseline levels.
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2

Immunohistochemical Analysis of Key Signaling Proteins

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p-NF-κB [93H1], NFκB [D14E12], p-Akt Ser473 [D9E], Akt (pan) [C67E7], Cyclin D1 [92G2], p-Rb [D59B7], Rb [D20], GSK-3β [27C10], Caspase-3 [8G10], cleaved Caspase-3 [5A1E] from Cell Signaling, Danvers, MA; IL-33 (M-266) from Santa Cruz Biotechnology, Dallas, TX; GAPDH [GAPDH-71.1], Actin [A2228], Vinculin [hVIN-1] from Sigma Aldrich, St. Louis, MO; p-GSK-3β [75745] and nuclear matrix protein p84 [EPR5662(2)] from Abcam, Cambridge, MA. Immunohistochemical antibodies used were as follows: CD163 [EPR19518] from Abcam, Cambridge, MA and CD3 [1F4] from BD Biosciences, San Jose, CA.
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3

Apoptosis and Cell Cycle Regulation

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PPI was purchased from the Institute for Drug Control (Shanghai, China, #111590) and dissolved in dimethyl sulfoxide (DMSO). Doxorubicin was purchased from Sangon Biotech (Shanghai, China, #DB3456) and dissolved in ultra-purified water. FITC Annexin V and propidium iodide were obtained from BD Biosciences (Franklin Lakes, USA, #556420). The cell cycle detection kit was from Key GENBioTECH (Nanjing, China). Antibodies against PARP (#9542), BAX (D2E11, #5023), BCL-2 (#2876), Vimentin (5G3F10, #3390), C-Myc (D84C12, #5605), GSK-3β (27C10, #9315), phosphor-GSK-3β (#8213), active β-catenin (D13A1, #8814) and β-catenin siRNA II (#6238) were from Cell Signaling Technology (Danvers, USA). Trypsin-EDTA, Lipofectamine 2000 (#11668) and TRIzol reagent (#15596) were from Invitrogen (Rockville, MD, USA). CHIR99021 (#SML1046) and antibody against β-actin (#A2228) were from Sigma-Aldrich (Saint Louis, USA). Monoclonal antibody of rabbit anti-Ki-67 and RIPA Cell Lysis Buffer (#P0013B) were got from Beyotime Institute of Biotechnology (Shanghai, China). SuperSignal Chemiluminescent HRP Substrate (#34078) was from Thermo Fisher scientific Inc (Rockford, USA). Matrigel (#356234) was purchased from BD Biosciences (Bedford, USA). PrimeScript RT reagent kit (#RR037A) and SYBR Premix Ex Taq II (#RR420L) were bought from TaKaRa (Dalian, China).
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4

Western Blot Analysis of Phosphorylated Proteins

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BMDCs were washed 2x with PBS and cell lysate were extracted with addition of hot SDS lysis buffer (1.1% SDS, 11% glycerol, and 0.1M Tris; pH 6.8) with 10% beta-mercaptoethanol. Total cell extracts were examined with 10% SDS polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred onto Whatman nitrocellulose membranes (GE Healthcare) according to standard techniques. Membranes were blocked in 5% bovine serum albumin (PAA Laboratories), 1% Tween-20 containing PBS for 1 hour at room temperature and were incubated with antibodies to specific antigens including phospho-Akt (Ser473) (#4060), phospho-Akt (Thr308) (#13038), Akt (Pan) (#4691), p-GSK-3β (Ser9) (#5558), GSK-3β (27C10) (#9315), p-mTOR (Ser2481) (#2974), and pan-mTOR (7C10) (#2983) which were bought from Cell Signaling Technology. The following secondary antibodies were used, anti-mouse IgG HRP linked antibody (NA931, GE Healthcare) or anti-rabbit IgG HRP linked antibody (NA934, GE Healthcare) depending on host for primary antibody. Signals were developed using ECL Western Blotting Substrate (#32209, Thermo Fisher Scientific) or SuperSignal West Femto Maximum Sensitivity Substrate (#34096, Thermo Fisher Scientific). Signals were detected with ChemiDoc imaging system (Biorad) and analysed with the Image lab software (Biorad).
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5

Melanoma Cell Culture and Assays

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B16F10 melanoma cells were purchased from the American Type Cell Culture Collection (Manassas, VA, USA). Dulbecco’s modified Eagle medium (DMEM), fetal bovine serum (FBS), and penicillin/streptomycin were purchased from Welgene (Republic of Korea). Protease inhibitor cocktail (PI), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), α-MSH, L-DOPA, and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (USA). Antibodies against TRP-1, TRP-2, tyrosinase, and MITF were purchased from Santa Cruz Biotechnology (USA). Phospho (p)-p44/42 MAPK (Erk1/2)(Thr202/Tyr204), p-stress-activated protein kinase (SAPK)/JNK, p-p38 MAPK, p-protein kinase B (Akt), p-glycogen synthase kinase-3β (GSK-3β; Ser9)(5B3), p44/42 MAPK (Erk1/2), SAPK/JNK, p38 MAPK, Akt, GSK-3β (27C10), anti-mouse immunoglobulin G (IgG) horseradish peroxidase (HRP), and anti-rabbit IgG HRP antibodies were purchased from Cell Signaling Technology (USA). bicinchoninic acid (BCA) kit was purchased from Pierce Chemial (USA). Radioimmunoprecipitation assay (RIPA) buffer, and enhanced chemiluminescence (ECL) kits were purchased from Bio-Rad (USA).
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6

Ras Pathway Protein Detection Protocol

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Antibodies were obtained from the following sources: SOS1 (clone 25/SOS1), p120RasGAP (clone 13/RAS-GAP), MEK1 (no. 610121), MEK2 (no. 610235) were from BD Transduction Laboratories; K-Ras F234 (sc-30), N-Ras F155 (sc-31), pan-Ras C-4 (sc-166691), p-ERK1/2(Y204) (sc-101761), and Neurofibromin (sc-67) from Santa Cruz Biotechnology (Heidelberg, Germany); Phospho-MAPK/CDK Substrates (PXS*P or S*PXR/K) (34B2) (no. 2325), p44/42 MAPK (ERK1/2) (no. 4695), Akt (no. 9272), p-Akt(S473) (no. 4060), EGFR (no. 4267), p-EGFR (Y1068) (no. 2236), Phospho-p90RSK (Ser380) (no. 9341), RSK1/RSK2/RSK3 (32D7) (no. 9355), p-GSK-3β (Ser9) (D85E12) (no. 5558); GSK-3β (27C10) (no. 9315), Phospho-S6 Ribosomal Protein (Ser235/236) (no. 2211), S6 Ribosomal Protein (5G10) (no .2217), p70 S6 Kinase (49D7) (no. 2708) were from Cell Signaling Technology (Danvers, USA). Anti-DAB2IP (ab87811) was from Abcam (Cambridge, UK). Y13-259 rat monoclonal anti-Ras IP-antibody was purified from hybridoma supernatant (A.T.C.C., Manassas, U.S.A.).
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7

Fibroblast Cell Protein Analysis

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Fibroblast cells (1 × 106 cells/dish) were seeded in 100 mm dishes and cultured for 24 h. Adenosine and cordycepin were treated for 4 h. The cells were then lysed and total cellular proteins were prepared. Then, 50 μg protein samples were analyzed by Western blotting with corresponding antibodies; GSK-3β (27C10) (1:1000, Cell Signaling Technology, Danvers, MA, USA), Phospho-GSK-3β (Ser9) (Cell Signaling Technology) GAPDH (1:2000, Santa Cruz, CA, USA). Western blot was analyzed by chemiluminescence detector iBright FL1000 (Invitrogen, Waltham, MA, USA).
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8

Immunoblot Analysis of Growth Factor Signaling

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Whole cell extracts were prepared by resuspending cell pellets in lysis buffer (150 mM NaCl, 5 mM EDTA, 0.5% Nonidet P-40, 50 mM Tris, pH 7.5), resolved by SDS-PAGE, and transferred to polyvinylidene difluoride membranes (NEN Life Science Products). Antibodies to pIGF-1R (Y1135), IGF-1R, pAKT (S473), pAKT (T308), AKT (C67E7), p-p70S6K (T389), p70S6K (49D7), pGSK3β (S9) and GSK3β (27C10) were from Cell Signaling. Antibodies to β-Actin (C4) and p53 (Ab-6) were from Santa Cruz Biotechnology and acetyl-p53 (Lys120) (ABE286) was from EMD Millipore. Primary antibodies were detected with goat anti-mouse (Pierce) or goat anti-rabbit (Life Technologies) secondary antibodies conjugated to horseradish peroxidase, using Clarity chemiluminescence (Bio-Rad).
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9

Adenosine Modulates Wnt Signaling in hDPCs

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hDPCs (1 × 106 cells/dish) were seeded in 100 mm dishes and cultured for 24 h. Adenosine was treated at concentrations of 0.75, 1.5, and 3 mM for an appropriate time. The cells were then lysed and total cellular proteins were prepared. The 50 μg protein samples were analyzed by western blotting with the corresponding antibodies; β-catenin (1:1000, Abcam, Cambridge, UK), GSK-3β (27C10) (1:1000, Cell Signaling Technology, Danvers, MA, USA), phospho-GSK-3β (Ser9) (1:1000, Cell Signaling Technology), an GAPDH (1:2000, Santa Cruz, Dallas, TX, USA). Western blot was analyzed by a chemiluminescence detector iBright FL1000 (Invitrogen, Waltham, MA, USA).
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10

Recombinant Adiponectin Production and Characterization

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Recombinant human adiponectin was produced at the University of Auckland as described previously (25 (link),26 (link)). Multimeric adiponectin forms in the purified protein were confirmed by native SDS-PAGE. Mouse TNF-α, lipopolysaccharide (LPS), SB216763, and FAs (sodium stearate, sodium palmitate, sodium myristate, and sodium dodecanoate) were purchased from Sigma. Antibodies to A20 (D13H3) and glucose synthase kinase 3β (GSK3β) (27C10) were from Cell Signaling, to β-actin (AC-15) from Abcam, to TNF-α (MP6-XT22) from R&D Systems, to laminin B (C20) from Santa Cruz, to tubulin from Sigma, and to inducible nitric oxide synthase (iNOS) from Abcam. Secondary antibodies were horseradish peroxidase–conjugated sheep anti-mouse or donkey anti-rabbit IgGs (GE Healthcare) and fluorescein isothiocyanate–conjugated goat anti-rabbit (Jackson ImmunoResearch).
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