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Varigatr

Manufactured by Harrick
Sourced in United States

The VariGATR is a laboratory instrument designed for the analysis and characterization of various materials. It is capable of performing variable angle spectroscopic ellipsometry measurements, which can provide information about the optical properties and thickness of thin films and coatings. The VariGATR is a versatile tool that can be used in a wide range of research and development applications.

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8 protocols using varigatr

1

FTIR Characterization of Thin Films

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FTIR were performed with an attenuated total reflection (ATR) accessory (VariGATR, Harrick Scientific) installed in an infrared spectrometer (Tensor 27, Bruker) equipped with a mercury cadmium telluride (MCT) detector. The measurements were performed adapting the protocol published by Lummerstorfer et al.42 (link) The Ge crystal of the ATR unit was cleaned before each background or sample measurements first with 2-butanone (99.5%, Merck) and then 30 min in the UV-ozone cleaner to remove any organic residues. After mounting the Ge crystal back to the ATR unit, the unit was purged for 15 min with dry N2 flow to remove moisture. First, the background spectrum was recorded against a cleaned, uncoated Si substrate. After re-cleaning the crystal, the sample was measured. The background and sample were measured by pressing the substrate top surface with 600 ± 20 N force against the germanium crystal, irradiating with p-polarized measurement beam at 60° angle against the Ge surface normal, and recording the spectra 1,024 times between 2,700 cm−1 and 3,100 cm−1 with 2 cm−1 resolution. The obtained spectra were corrected for horizontal baseline, after which the peak locations were obtained using the Bruker OPUS (ver. 7.2) software function for finding the peak locations (half width at half maximum).
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2

Multitechnique Surface Characterization

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Scanning electron
micrographs are
obtained using a Zeiss Ultra 60. Atomic force microscopy is performed
using a Bruker Dimension Icon. Water contact angle measurements are
taken with a Kruss DSA100E. Surface infrared spectroscopy measurements
are made using a Thermo-Fischer Nicolet iS50 FTIR equipped with variable
angle reflectance accessory by Harrick VariGATR and a germanium crystal.
The film thickness is measured with ellipsometry with a JA Woollam
M-20000 DI ellipsometer.
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3

Antibody Immobilization on Functionalized ZnO Surface

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The infrared spectra collected demonstrating the functionalization of the target antibody onto the thiolated ZnO surface was captured using Thermo Scientific Nicolete iS-150 FTIR in Attenuated Total Reflectance (ATR) mode. The tool was equipped with a KBr window and deuterated triglycine sulphate (DTGS) detector. For this study, a Harrick VariGATR sampling stage with a 65° germanium crystal was used. The ATR-IR samples were prepared on a glass substrate with ZnO identical to the deposition parameters of the sensor substrate. Mimicking the sensor immunoassay (described in section 2.4), the surface was immobilized with DSP. This was followed by incubating PCT and CRP antibodies in PBS separately on the DSP functionalized ZnO surface. Prior to any functionalization, the glass substrate was cleaned thoroughly with DI water. The spectra were collected with a resolution of 4 cm−1 for 256 scans in a wavelength range of 4000 cm−1 to 600 cm−1.
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4

Characterization of Functionalized PEEK Surfaces

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An attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectrometer (Spectrum 100, Perkin Elmer, Waltham, MA, USA) equipped with a Ge crystal ATR unit (VariGATR, Harrick Scientific Products, Pleasantville, NY, USA) was used to detect the characteristic functional groups on the bare PEEK, UV light-irradiated PEEK and MePRX-PEEK surfaces.
All the spectra were recorded in the frequency range of 1,000-4,000 cm -1 at a resolution of 4 cm -1 and analyzed using Spectrum Express software (PerkinElmer). Static contact angle analysis was performed in an air atmosphere using a contact angle measurement instrument (DropMaster DM-501, Kyowa Interface Science, Saitama, Japan) for four types of PEEK surfaces: bare, MePRX-VBn-coated, UV light-irradiated, and UV light-irradiated MePRX-VBn-coated PEEK surfaces. All samples were washed with DMSO and ethanol and then dried at 60°C. A single water droplet (5 μL) was placed on each surface and monitored using a charge-coupled device camera at 23°C. The captured images were analyzed using FAMAS version 5.0.0 software (Kyowa Interface Science).
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5

Multilayer Polymer Characterization

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Ellipsometry measurements were performed
on a JA Woollam M-20000 DI ellipsometer using a Cauchy model for the
polymer layer. Infrared spectroscopy measurements were performed on
a Thermo-Fisher Nicolet iS50 FTIR equipped with a variable angle reflectance
accessory by Harrick VariGATR and a germanium crystal. X-ray photoelectron
spectroscopy (XPS) measurements were taken on a Thermo-Fisher K-Alpha
Plus XPS/UPS instrument with a monochromatic Al X-ray Source (1.486
eV). Survey spectra (1350 to −10 eV) were taken with 1 eV steps;
high resolution O 1s, N 1s, C 1s, and Si 2p spectra were taken with
0.1 eV steps.
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6

FTIR Analysis of Coated Titanium Surfaces

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The spectra of a bare Ti surface, as well as p-, PC-, and PCN-coated Ti surfaces was measured using a Nicolet 6700 FTIR spectrometer (Thermo Fisher Scientific, Waltham, MA, United States) with Ge-ATR arrangement (VariGATR, Harrick Scientific, Pleasantville, NY, United States). The experimental setup for all spectra included 3,000 scans, an applied force of 350 N, an incident angle of 65°, and 4 cm−1 resolution.
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7

Infrared Spectroscopy of MoS2 Nanosheets

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Infrared spectra of MoS2 nanosheets and functionalized MoS2 nanosheets were recorded with a Thermo Scientific Nicole iS50 FT-IR using an Attenuated Total Reflectance (ATR) stage. The tool was equipped with a deuterated triglycine sulfate (DTGS) detector and KBr window. A Harrick VariGATR sampling stage with a 65° Germanium ATR crystal was used in this study. ATR-FTIR specimens were prepared by drop casting the solutions on silicon wafer with 300 nm SiO2 as substrate. The contact area was about 1 cm2. All spectra were recorded between 4000 and 600 cm−1 with a resolution of 4 cm−1 and 256 scans.
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8

Characterizing Protein Binding on Mo Surface

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Attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectrograms were performed to establish the binding of the EDC–NHS crosslinker to the Mo surface, and subsequent binding of IL-6 and CRP antibody to the EDC–NHS crosslinker. The tool was equipped with a deuterated triglycine sulfate detector and KBr window. A Harrick VariGATR sampling stage with a 65° germanium ATR crystal was used in this study. Measurements were taken as an average of 512 scans in the range of 4000–600 cm-1 with 4 cm-1 resolution. ATR-FTIR slides were prepared on cleaned glass slides with analogous metal deposition to the electrode fabrication process. The slides were incubated with 100 μl of the EDC–NHS mixture for 1 h. A 3 × PBS wash was performed to remove any unbound crosslinker. After washing and completely drying with nitrogen, the Mo EDC–NHS measurement was taken. After EDC–NHS functionalization, 100 μl of 10 μg/ml target antibody was incubated on the slide surface for an additional 30 min (one slide for IL-6 antibody and one slide for CRP). A 3× PBS wash was performed to remove unbound antibodies and the slides were dried with nitrogen and silica desiccant beads before the measurements were taken. All measurements represent individual slide preparations, with none being used more than once.
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