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21 protocols using ly6c percp cy5

1

Characterization of Myeloid Cell Subsets

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Blood was collected in EDTA tubes via facial vein bleed from live mice. Whole blood was stained with fluorochrome-conjugated antibodies and treated with Ammonium-Chloride-Potassium to lyse red blood cells. Cell pellets were resuspended with FACS buffer (BD bioscience), blocked (FcBlock; BD Biosciences) for 30 min, and stained (30 min) with Ly6C-PerCP/Cy5.5 (Biolegend, clone HK1.4) and Ly6G-APC (eBioscience, clone 1A8-Ly6g). CSF1R-expressing (GFP+) cells in MacGreen mice were gated for viability (PI). Data were acquired on a BD LSR II flow cytometer (BD Biosciences) using “Fluorescence minus one” controls to set up gates. Data were analyzed by FlowJo v10 software (Tree Star). IKKβMGKO mice were validated by collecting tail blood from adult Cx3cr1CreER-EYFP/+:IkbkbF/F mice before and after (1 and 4 wks) TAM administration. After red blood cell lysis, eYFP+ monocytes were sorted by a FACSAria II (Becton Dickinson) and gated for viability (DAPI). IKKβ mRNA levels were measured in sorted cells by RT-qPCR.
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2

Phenotypic Analysis of Muscle Macrophages

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The magnetically separated muscle-derived CD45+ cells were stained with Alexa Fluor 488-conjugated anti-F4/80 antibody (MF48020, Invitrogen) at room temperature for 15 min. The cells were gated based on their forward and side scatter characteristics. Macrophages were gated as F4/80+ cells. F4/80+ macrophages were also analyzed for expression of Ly6C, CD206, or major histocompatibility complex (MHC)II, following staining with the corresponding antibodies, Ly6C PerCP-Cy5.5 (128012, BioLegend), CD206-PE (141705, BioLegend), or MHCII-FITC (107605, BioLegend), respectively. Fluorescent intensity was measured on a Becton Dickinson FACSCalibur instrument (Becton, Dickinson and Company).
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3

Comprehensive Immune Cell Profiling of Adipose and Liver Tissues

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Liver and epigonadal visceral white adipose tissues were prepared for flow cytometry after cardiac perfusion with 10 mL HBSS (5 mM HEPES, 0.5 mM EDTA), as described (27 ). Following mechanical disruption, tissue was Liberase (Roche)-digested for 30 minutes at 37°C (shaking at 130 RPM) and filtered. Cells were separated on a 40% iodixanol density gradient by centrifugation at 1038 g for 25 minutes (no brake). Cells were blocked with anti-CD16/32, stained with Zombie Aqua (Biolegend) and antibodies (Biolegend): F4/80-FITC (BM8), Ly6C-PerCP/Cy5.5 (HK1.4), CD19-PE/Cy7 (6D5), CD11c-APC (N418), CD11b-AF700 (c1/70), I-A/I-E-APC/Cy7 (M5/114.15.2), CD45-PacBlue (30-F11), Ly6G-BV605 (1A8), CD3e-FITC (145–2C11), CD62L-PE-dazzle (MEL-14), CD8a-PerCP/Cy5.5 (53–6.7), PD-1-PE/Cy7 (29F.1A12), CD4-APC (GK1.5), CD44-BV605 (IM7). Beckman Coulter CytoFLEX and FlowJo were used to assess immune cell populations using the following gating strategy: Cells, singlets, live cells, CD4+ T cells (CD45+CD3e+CD4+), CD8+ T cells (CD45+CD3e+CD8+), B cells (CD45+CD19+), Kupffer cells (liver only, CD45+F480hiCD11blo), macrophages (CD45+F480intCD11bhiLy6clo), inflammatory monocytes (CD45+F480intCD11bhiLy6chi), dendritic cells (CD45+F480CD11c+MHCII+), and neutrophils (CD45+F480CD11b+ Ly6G+SSChi).
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4

Phenotyping Muscle Macrophages and Neutrophils

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The magnetically separated muscle-derived CD45+ cells were stained with a combination of Alexa Fluor 488-conjugated anti-F4/80 antibody (MF48020, Invitrogen, Carlsbad, USA) and Alexa Fluor 647 conjugated anti-Ly6G/Ly6C (GR-1) antibodies (108418, BioLegend, San Diego, USA) at room temperature for 15 minutes. Cells were gated based on their forward- and side-scatter characteristics. Macrophages were gated as GR-1 negative and F4/80 positive, while neutrophils as F4/80-negative and GR-1-positive cells. F4/80-positive macrophages were also analyzed for Ly6C, CD206 or MHCII expressions following staining with Ly6C PerCP-Cy5.5 (128012, BioLegend, San Diego, USA), CD206-PE (141705, BioLegend, San Diego, USA) or MHCII-FITC (107605, BioLegend, San Diego, USA) antibodies, respectively. Fluorescent intensity was detected with a Becton Dickinson FACSCalibur instrument.
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5

Immune Cell Phenotyping Protocol

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Peripheral blood mononuclear cells, peritoneal cells or lamina propria cells were taken and blocked in 5% fetal bovine serum for 20 min and then stained with CD45-FITC, CD11b-PE, CCR2-APC, Ly6C-PerCP Cy5.5, Ly6G-PerCP Cy5.5, F4/80-APC, or/and CD11c-APC (BioLegend) at 4 °C for 30 min. Data were acquired from FACS caliber (BD Biosciences) and analyzed using FlowJo 7.6 (TreeStar).
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6

Tracking Monocyte Recruitment in Atherosclerosis

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Circulating monocytes were labeled with 5-ethynyl-2′-deoxyuridine (EdU) to examine monocyte recruitment into atherosclerotic lesions, as described previously (35 (link)). Mice were injected intraperitoneally with 250 μl containing 1 μM EdU in saline (Invitrogen, Waltham, MA) two days before the sacrifice. To measure monocyte labeling efficiency, we examined EdU+ monocytes in circulation 48 h after injection by flow cytometry. We incubated blood samples with red blood cell lysis buffer (BioLegend, San Diego, CA) and stained them with primary antibodies antimouse CD45-FITC (Clone 30-F11; BioLegend), CD115-APC (Clone AFS98; BioLegend), and Ly6c-PerCP/Cy5.5 (Clone RB6-8C5; BioLegend) to identify circulating monocytes. Cells were permeabilized, and EdU was detected using Click-IT EdU Pacific Blue Flow Cytometry Assay Kit (Invitrogen). Flow cytometry was performed in LSR II analyzer (B.D. Biosciences, Franklin Lakes, NJ), and data were analyzed using FCS Express 5.01.0082 (De Novo Software, Pasadena, CA; https://denovosoftware.com/).
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7

Multicolor Flow Cytometry Panel

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Commercial antibodies (clones, fluorophores and sources) are as follows: CD3-FITC (145–2C11), CD62L-PE (Mel-14), CD4-PErCP/Cy5.5 (RM4–5), CD8-PerCP/Cy5.5 (53–6.7), CD8-APC (53–6.7), CD209b-APC (22D1), IgM-FITC (II/41), CD4-PE (GK1.5), CD25-AF488 (PC61.5), Streptavidin-PE, CD169-PE/Cy7 (3D6.112) (eBioscience, San Diego, CA); CD11b-FITC (M1/70), CD49d-FITC (R1–2), TCRβ-FITC (GL3), CD21/35-PE (7E9), CD23-APC (B3B4), Ly6G-PE (RB6–8C5), Ly6C-PerCP/Cy5.5 (HK1.4), CD11c-PE/Cy7 (N418), B220-PerCP/Cy5.5 (RA3–6B2), B220-APC (RA3–6B2), B220-APC/Cy7 (RA3–6B2), CD69-BV421 (H1.2F3),CD23-Biotin (B3B4), F4/80-APC (BM8), Ly6G-BV421 (1A8), CD45-Pacific Blue (30-F11), CD45-BV510 (30-F11), CD43-PE (1B11), CD24-PE/Cy7 (M1/69), IgD-Pacific Blue (11–26c.2a), CD69-PE/Cy7 (H1.2F3), IgD-PerCP/Cy5.5 (11–26c.2a), Ly51-AF647 (6C3), CD3-Pacific Blue (17A2), CD3-PE (17A2), TCRγ/δ-biotin (GL3), Streptavidin-PE/Cy7 (Biolegend, San Diego, CA); Siglec-F-PE (E50–2440) (BD Biosciences, San Jose, CA). Samples were preincubated with 1 μg Fc-block (2.4G2 hybridoma; ATCC).
Cells were acquired either on the BD Biosciences LSR Fortessa or with a BD FACScan flow cytometer with DxP multi-color upgrades by Cytek Development Inc. (Woodland Park, NJ) and analyzed using FlowJo software (FlowJo LLC, Ashland, OR).
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8

Murine Retinal Cell Isolation and Characterization

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Mice were perfused transcardially under isoflurane anesthesia with phosphate-buffered saline (PBS) to flush vessels before euthanasia. After euthanasia, eyes were enucleated into ice-cold phosphate-buffered saline (PBS). The corneas, lenses and hyaloid vasculatures were removed and the retinas isolated immediately. To dissociate retinas into single cells, each retina was incubated in 1 ml of papain dissociation solution (Roche Diagnostics GmbH, REF#10108014001, Mannheim, Germany) prepared according to manufacturer’s protocol for 30 min in a 37 °C water bath. Single cell suspensions were washed with FACs buffer on ice and then incubated with primary antibody cocktails for 45 min at 4 °C in the dark. Antibodies used included CD45 Apc-eFluor780 (Invitrogen, Cat#47-0451-82, Waltham, MA, USA), Ly6C Percp/Cy5.5 (Biolegend, Cat#128012, San Diego, CA, USA), Ly6G (BV605 Biolegend, Cat#127639), CD11b PE-CF594 (BD Biosciences, Cat#562287, Franklin Lakes, NJ, USA), CD31 PE (Invitrogen, Cat#2114546) and Fixable viability Dye eFluor506 (Invitrogen, Cat# 65-0866-14). The cells were then washed with FACs buffer, resuspended and analyzed using BD FACSCelesta flow cytometer (BD Biosciences) and FlowJo™ v10.8 Software (BD Life Sciences, Franklin Lakes, NJ, USA). Gating of the different cell populations was performed as previously published [23 (link)].
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9

Sepsis Model in BALB/c Mice

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Nine-week-old male BALB/c mice were used for these experiments. Animals were anaesthetized by isoflurane (Forene). After abdominal incision, the cecum was ligated, punctured with a gauge needle (25G), and a small amount of fecal matter was released. For the sham group, after abdominal incision, the cecum was manipulated but was neither ligated nor punctured. After the cecum was returned to the abdomen, the abdominal cavity was closed in two layers and the mice were resuscitated with 30 ml kg−1 body weight of saline (0.9% NaCl) administered subcutaneously. LCC-12 (0.3 mg kg−1, intraperitoneal injection) was administered at 4 h, 24 h, 48 h, 72 h and 96 h following CLP creation. Mortality incidence was monitored every 2 h up to 120 h (except from 10 pm to 6 am) after CLP creation. Dexamethasone was administered intraperitoneally at 1 mg kg−1 5 min before CLP creation. ICP-MS experiments were conducted on SPMs as described in ‘ICP-MS’. Tissue-specific data were normalized against dry weight. The sorting of SPMs was done using the following antibodies: CD11b-Pacific Blue (BioLegend, 101224), F4/80-PE (TONBO, TNB50-4801-U100), Ly6C–PerCP/Cy5.5 (BioLegend, 128012) and Ly6G–AF647 (BioLegend, 127610). The sorted SPMs corresponded to CD11b+F4/80intLy6CLy6G cells.
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10

Multicolor Flow Cytometry for Immune Profiling

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Processed cells from each mouse were stained with Live Dead Aqua Dead Cell Kit (Invitrogen) for 30 minutes on ice, washed with PBS and then blocked with rat anti-mouse Fc antibody (CD16/CD32 clone 2.4G2, BD Biosciences) in FACs buffer for 10 minutes. Following blocking, cells were stained for the following anti-mouse fluorophores for 1 hour on ice: CD3-PerCP Cy5.5 (Biolegend), CD3-APC Cy7 (Biolegend), CD4-APC Fire (Biolegend), CD8-PE Cy7 (Biolegend), CD44-PE (Biolegend), CD62L-APC (Biolegend), CCR7-BV421 (Biolegend), CD11b-PETR (ThermoFisher), Ly6C-PerCP Cy5.5 (Biolegend), Ly6G-V450 (Biolegend), F480-PE (ThermoFisher), and CXCR4-APC (Biolegend). Cells were then washed, resuspended in FACs buffer and assayed on a Cytoflex flow cytometer (Beckman Coulter). FACs buffer consisted of HBSS (Sigma) with 2% bovine calf serum (Sigma), 0.1% sodium azide (Sigma) and 0.1% HEPES.
The “total number” of immune cells was determined by the end gated count by FACS analysis of the single cell suspension and represent the absolute number of cells infiltrating in the entire analyzed tissue. The “percentage” of immune cells represents the percentage of an immune cell subtype gated among the gated live immune cell counts as determined by Live Dead Aqua and the plot of side scatter vs forward scatter.
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