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45 protocols using m205 fca

1

Visualizing Mite Cuticle and Honey Bee Fat Bodies

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Before observation, adult V. destructor and T. mercedesae mites were submerged in 30% peroxide for 5 days to make the cuticle transparent. Nymphal mites were only rinsed with 70% ethanol to remove biostains that may be attached to their exterior, because their cuticles were sufficiently transparent without treatment. Then, pictures were taken with a Leica M205 FCA fluorescent stereomicroscope equipped with a Leica DFC7000T digital color camera (Leica Microsystems, Germany). The fluorescent signal of Nile red was acquired through an RFP filter set (541–551 nm excitation, LP 590 nm emission), and the Uranine signal was acquired through a GFP filter set (450–490 nm excitation, LP 500 nm emission).
Additionally, the distribution of fat bodies in the abdomen of developing worker pupae and adults were investigated. In vitro reared honey bee larvae were fluorescently stained as described above. Subsets of resulting biostained pupae were sampled every other day from the start of pupation until adult emergence. The abdominal sternite was cut out and briefly washed with PBS. Then, the inner surface of the abdominal sternite was photographed using a Leica M205 FCA fluorescent stereomicroscope equipped with a Leica DFC7000T digital color camera. Photos were captured and processed using LASX software (v2.02.15022).
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2

Skeletal Staining in Zebrafish

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Zebrafish larvae and juveniles were stained with Alcian blue and alizarin red following a protocol modified from Walker and Kimmel, 2007 (link), previously described by Waldmann et al., 2021 (link). Specimens were imaged using a Leica M205 FCA fluorescence stereomicroscope with attached Leica DFA 7000T camera.
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3

Monitoring rMDV in Feathers

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To monitor the time at which each rMDV reached the FFs, two flight feathers were plucked from the right and left wings (4 total) of experimentally-infected birds weekly starting at 7 days post-infection (pi) for pUL47eGFP expression. A Leica M205 FCA fluorescent stereomicroscope with a Leica DFC7000T digital color microscope camera (Leica Microsystems, Inc., Buffalo Grove, IL, USA) was used to document pUL47eGFP expression. Feather plucking for all experimentally infected birds in Trial 2 was discontinued after 42-days pi because only a few experimentally infected birds remained.
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4

Genome-Wide RNAi Screening for Germ Cell Reprogramming

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The RNAi screening was performed as described previously for the whole-genome and chromatin-library RNAi screening (20 (link),22 (link)). In brief, conjugation of LoriT-lin-53 (EPI300 bacteria) with the chromatin library (all in HT115 bacteria) was performed as described above. The conjugated clones were used to generate six-well RNAi NGM agar plates supplemented with 1mM IPTG and 50 μg/ml Carbenicilin. Plates were seeded with conjugated RNAi bacteria and Renilla luciferase (Rluc) RNAi was used as control. The CONJUDOR RNAi screen for germ cell reprogramming barriers was performed as an F1 screen using a standard RNAi feeding protocol (23 (link)). Screening was performed in duplicates using synchronized L1 animals which were grown at 15°C on normal food. After reaching the L4 larval stage animals were transferred to RNAi plates and grown on RNAi at 15°C until the F1 progeny reached the L4 stage. Subsequently, animals were heat-shocked at 37°C for 30 min and afterwards incubated at 25°C until the next day as described before (13 ,22 (link)). Plates were screened for presence of ectopic GFP in the germline using a fluorescence stereo microscope such as the M205 FCA (Leica) as described in previous studies to screen for this phenotype (10–12 (link),20 (link),22 (link)).
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5

Imaging Fish Caudal Fin Development

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For documentation of the caudal-fin development, embryos and larvae were photographed using a Leica M205 FCA with an attached Leica DMC6200 camera operated with the software Leica Application Suite (version: 3.6.0.20104). Additionally, specimens of Glossolepis incisus, Oryzias woworae and Poropanchax normani were imaged using fluorescent light making use of the autofluorescent properties of Alizarin red. Adult specimens were photographed using a Canon EOS 80D with a Canon MP-E 65 mm objective. Images were processed, without altering any morphological structures, and drawings were produced using Adobe Photoshop (version: 22.0.0). Figure plates were assembled in Adobe Illustrator (version: 25.0).
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6

Staining and Imaging Bones and Cartilage in Ancistrus

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Bones and cartilage in Ancistrus sp. specimens were stained by Alcian blue 8GX (Sigma) and Alizarin red S (Sigma) as previously described63 (link). Alkaline phosphatase (ALP) staining was performed with BM-purple (Roche) as previously described64 (link). Paraffin sectioning was performed by the Research Pathology Services of Rutgers University. Briefly, juveniles and adult fish were fixed by 4% PFA at 4° C for one to two weeks and then decalcified in 10% EDTA at 4° C for one to two weeks. After decalcification, samples were dehydrated through a graded ethanol series, cleared in xylene, and embedded in paraffin. Serial Sections (8–10 µm) were collected and stained by standard hematoxylin and eosin (HE) staining. Bone-stained samples and HE-stained sections were imaged on an M205 FCA (Leica) stereoscope and Eclipse E800 microscope (Nikon), respectively, equipped with cameras.
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7

Zebrafish Macrophage and Neutrophil Modulation

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Prior to any experimental procedure, the larvae were fasted for 24 h. At 3 dpf, the larvae were pre-selected for mpeg1:EGFP (green macrophages), and lyz:dsRED2 (red neutrophils), using a fluorescence magnifier (Leica M205 FCA) equipped with a digital camera (Leica DFC 365 FX), and green and red fluorescence filters. Normal and high-cholesterol diets (ND and HCD, respectively) were prepared as described previously [40 (link)], using Golden Pearl Diet 5–50 nm—Active Spheres. At 5 dpf, zebrafish larvae were separated in different tanks and maintained in the system. They were kept in medium size tanks with a density of 80 larvae per tank and fed for 8 days with ND or HCD (4 mg per day). At 13 dpf, the larvae were separated into small breeding boxes (20–30 larvae) and treated with vehicle (0.1% DMSO) or navitoclax (10 µM in 0.1% DMSO) for 3 days, with daily water renewal, and fed with ND or HCD (2.5 mg per day).
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8

Photodynamic Therapy for MC38 Cells

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MC38 cells were seeded into a 24-well plate (5 × 104 cells/well) and incubated overnight for adherence. After removing the complete medium, cells were washed twice with 1 mL PBS and transfected with 100 μL of serum-free RPMI 1640 medium containing ASCP NPs (final concentrations: 2 or 4 μg/mL) for 4 h. Then, cells were treated with or without irradiation inspired by an 808 nm laser (0.5 W/cm2) for 10 min. After being cultured for 24 h, cells were treated with twice PBS washing and stained with calcein-AM (for live cells: green fluorescence) and PI (for dead cells: red fluorescence). Fluorescence images of live–dead staining of MC38 cells were obtained with a fluorescent microscope (Leica M205 FCA, Wetzlar, Germany) with filters set for FITC and PI.
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9

Quantifying GFP Luminance and Colocalization

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Images for luminance quantification were taken using a LEICA M205 FCA at 1X. A 500 ms exposure was used to measure the native fluorescent luminance from GFP based on the versatile dynamic range revealed in an exposure series analysis of 100, 500, and 1,000 ms (Supplementary Figure S1). GFP luminance analysis of striatum was performed on ImageJ with an ROI restricted to the expression in striatum. A Zeiss LSM 900 Airyscan 2 confocal microscope was used to collect images for colocalization of GFP with cell markers labeled with immunohistochemistry. For quantification of colocalization, cell counts of images taken with 20X and 63X objectives were quantified using ImageJ.
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10

Histological Analysis of Myocardial Infarction

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SSSe NPs or normal saline were administered to MI or sham mice. Some hearts were harvested and observed under a stereo fluorescence microscope (Leica, M205FCA). Other hearts were frozen at −80°C and then frozen at −20 °C for 30 min. The specimens were embedded with OCT and sliced into 10 µm sections. After being washed with PBS three times for 5 min, the slices were incubated with 0.05% Triton for 5 min. Then, the slices were washed again, sealed with DAPI‐Fluoromount‐G, and photographed by a fluorescence microscope.
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