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10 protocols using model 963

1

Monosynaptic rabies virus tracing

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A three-step monosynaptic rabies virus tracing was performed as described previously10 (link). Briefly, postnatal day 17 C57B/L6 mice were anesthetized with a mixture of ketamine (100 mg/kg) and xylazine (10 mg/kg). AAV2-retro-Cre was injected into two sites in the mystacial pad (between the B1-B2 and C1-C2 vibrissae, 500nl each) using a volumetric injection system (based on a single-axis oil hydraulic micromanipulator MO-10, Narishige)48 (link) equipped with a beveled glass micropipette (Drummond, 5-000-2005). Twenty days or longer after the first injection, the mice were anesthetized with isoflurane (1~2%), placed in the stereotaxic instrument (Model 963, David Kopf Instruments), and stereotaxically injected with 120 nl of a 1:1 mixture of AAV2/8-CAG-Flex-TVA-mCherry and AAV2/8-CAG-Flex-oG into the lateral part of VII where vibrissa motor neurons reside (vFMN, 5.8 mm posterior, 1.38 mm lateral to the bregma, and 5.2 mm below the brain surface) at the rate of 30nl/min using a beveled glass micropipette equipped with a microsyringe pump (UMP3, WPI) controlled by Micro4 controller (WPI). Fourteen days later, 250 nl of EnvA(M21)-RV-ΔG-GFP (diluted at 1:10 in PBS) was injected into the same injection site. Five days later, the mice were perfused for histological analysis.
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2

Stereotaxic Surgery for Pedestal Implantation

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Mice were anaesthetized with isoflurane and oxygen (4% isoflurane for induction and 2–2.5% for maintenance). Body temperature was monitored during the procedure and maintained at 37°C. Animals were fixed in a stereotaxic device (Model 963, David Kopf Instruments, Tujunga CA, USA). The surgery followed previously described standard procedures for pedestal placement [2 (link),14 (link)]. In short, the hair on top of the head was shaved, Betadine and lidocaine were applied on the skin and an incision was done in the scalp to expose the skull. The tissue on top of the skull was removed and the skull was kept dry before applying Optibond prime adhesive (Kerr, Bioggio, Switzerland). A pedestal equipped with a magnet (weight approx. 1 g) was placed on top of the skull with Charisma (Heraeus Kulzer, Armonk NY, USA), which was hardened with UV light. Rimadyl was injected subcutaneously (5 mg per kg). Mice were left under a heating lamp for recovery for at least 3 h. Mice were given 3–4 resting days before starting experiments.
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3

In Vivo Molecular Labeling of Neural Cells

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Mice were anesthetized with an injection of a mixture of medetomidine/midazolam/butorphanol (MMB; 0.75 mg/kg, 4 mg/kg, and 5 mg/kg, respectively), and the head was immobilized on the stereotaxic stage (David Kopf Instruments; model 963) using ear bars. A 1.5 μl volume of PSVue 480 (1 mM; Molecular Targeting Technologies, Inc.), PSVue 550 (1 mM; Molecular Targeting Technologies, Inc.), AnnexinV-FITC (MBL Co., Ltd.), or MFG-E8-FITC (83 µg/ml; Haematologic Technologies, LLC) was stereotaxically injected into the OB (5.0 mm anterior, 0.9 mm lateral to bregma, and 1.5–2.0 mm deep) or hippocampal DG (1.4 mm posterior, 0.6 mm lateral to bregma, and 1.9–2.4 mm deep) of male adult Dcx-CreERT2; R26-tdTomato, Dcx-CreERT2; R26-EPT; R26-tdTomato, Dcx-CreERT2; R26-D89E; R26-tdTomato, and WT mice as reported previously (Sawada et al., 2018 (link)). These mice were fixed 3 h after injection by transcardiac perfusion with 4% PFA/0.1 M phosphate buffer (PB).
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4

Stereotaxic Virus Injections in Mice

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Stereotaxic injections were performed as previously described 7 (link). Briefly, mice were anesthetized with xylazine (5mg per kg) and ketamine (75mg per kg) diluted in saline and placed into a stereotaxic apparatus (model 963, David Kopf Instruments, Tujunga, CA). For postoperative care, mice were injected intraperitoneally with meloxicam (0.5mg per kg). After exposing the skull via a small incision, a small hole was drilled for injection. A pulled-glass pipette was inserted into the brain and virus was injected by an air pressure system. A micromanipulator (model S48 stimulator, Grass Technologies, Rockland, MA) was used deliver the injection at 5nl per min and the pipette was withdrawn 5 min after injection. For electrophysiology and tracing, AAV1-CBA-Flex-ChR2(H134R)-mCherry (University of Pennsylvania School of Medicine, Philadephia, PA) was injected unilaterally into the arcuate (2–5nL; from Bregma, AP: −1.35mm, DV: −6.00mm, ML: ±0.2mm). For in vivo chemogenetic experiments, AAV8—hSyn-DIO-hM3Dq-mCherry (University of North Carolina Vector Core, Chapel Hill, NC) was bilaterally injected into the arcuate (2–5nL, coordinates as above). For profiling of Arc-ME RIP-Cre neurons, AAV8-EF1a-DIO-eYFP (University of North Carolina Vector Core, Chapel Hill, NC) was injected into arcuate (100nL, coordinates as above).
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5

Stereotaxic Virus Injections in Mice

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Stereotaxic injections were performed as previously described 7 (link). Briefly, mice were anesthetized with xylazine (5mg per kg) and ketamine (75mg per kg) diluted in saline and placed into a stereotaxic apparatus (model 963, David Kopf Instruments, Tujunga, CA). For postoperative care, mice were injected intraperitoneally with meloxicam (0.5mg per kg). After exposing the skull via a small incision, a small hole was drilled for injection. A pulled-glass pipette was inserted into the brain and virus was injected by an air pressure system. A micromanipulator (model S48 stimulator, Grass Technologies, Rockland, MA) was used deliver the injection at 5nl per min and the pipette was withdrawn 5 min after injection. For electrophysiology and tracing, AAV1-CBA-Flex-ChR2(H134R)-mCherry (University of Pennsylvania School of Medicine, Philadephia, PA) was injected unilaterally into the arcuate (2–5nL; from Bregma, AP: −1.35mm, DV: −6.00mm, ML: ±0.2mm). For in vivo chemogenetic experiments, AAV8—hSyn-DIO-hM3Dq-mCherry (University of North Carolina Vector Core, Chapel Hill, NC) was bilaterally injected into the arcuate (2–5nL, coordinates as above). For profiling of Arc-ME RIP-Cre neurons, AAV8-EF1a-DIO-eYFP (University of North Carolina Vector Core, Chapel Hill, NC) was injected into arcuate (100nL, coordinates as above).
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6

Pseudotyped RV-ΔG Injection in Motor Nuclei

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For specific infection and glycoprotein complementation of pseudotyped RV-∆G, helper viruses (120 nl, 1:1 mixture of AAV2/8-CAG-Flex-TVA-mCherry and AAV2/8-CAG-Flex-oG) were stereotaxically injected into the lateral part of the facial motor, hypoglossus, or trigeminal motor nuclei using a stereotaxic instrument (model 963, David Kopf Instruments, Tujunga, CA, USA) 3 weeks or longer after the peripheral tissue injection. The viruses were injected at the rate of 30 nl/min with the injection system described above. The stereotaxic coordinates used were for the lateral part of the FN: 5.8 mm posterior, 1.38 mm lateral to the Bregma, and 5.2 mm below the brain surface; for the hypoglossus nucleus: 5.8 mm posterior, 0.05 mm lateral to the Bregma, and 5.15 mm below the brain surface with an anteroposterior 20° angle from vertical; and for the trigeminal motor nucleus: 4.1 mm posterior, 1.27 mm lateral to the Bregma, and 4.6 mm below the brain surface with an anteroposterior 20° angle from vertical. Before suturing the skin, the craniotomy was filled with kwik-sil (World Precision Instruments, Inc, Sarasota, FL, USA) and covered with cyanoacrylate glue (Super Glue, Loctite, Westlake, OH, USA).
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7

Head-mounted device implantation in mice

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Mice aged 44–49 days were anaesthetized with 1%–2% isoflurane in oxygen and injected with analgesia (Carprofen, 5 mg/kg IP). Ophthalmic ointment (Alcon, UK) was applied to the eyes and sterile saline (0.1 ml) injected subcutaneously as needed to maintain hydration. A circular piece of scalp was removed and the underlying skull was cleaned and dried. A custom machined aluminum head-plate was cemented onto the skull using dental adhesive (Superbond C&B, Sun Medical, Japan). Three miniature female connectors (853-87-008-10-001101, Preci-Dip, Switzerland) were fixed to the implant with dental adhesive to enable stable connection of two cameras and an inertial measurement unit (IMU) sensor during experimental sessions. The positions and angles of the two eye tracking cameras and IR mirrors were adjusted using a stereotaxic instrument (Model 963, Kopf Instruments, USA) to align the view of the camera with the eye axis. Additionally, the pitch and roll axes of the IMU sensor were aligned to coincide with the plane spanned by the horizontal eye axes. Mice were allowed to recover from surgery for at least five days and handled before the experiments began.
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8

Extracellular Recordings in Rodent Brains

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Extracellular recordings were implemented using 32-channel 10-mm single shank electrodes, where electrode sites were arranged in three columns, spaced 50 microns apart from each other (A1x32-Poly3-10mm-50-177, NeuroNexus, Ann Arbor, MI, USA). Electrodes were inserted into the rodent skull using a small animal stereotaxic frame with 10-micron precision manipulators (Model 963, David Kopf Instruments, Tujunga, CA, USA). Electrodes were inserted at a 40-degree angle in the sagittal plane.
Rodents were sedated using either ketamine/xylazine cocktail for results presented in Figs. 3b–g and 4 or isoflurane for results in Figs. 3a, 5, 6, and 7. All animals were skin prepared with hair removal gel. Rodent heart rate, respiration rates and rectal temperatures were monitored throughout recordings. Cranial windows, 1–2 mm in diameter, were opened in the skull using a high-speed micro drill (Model 1474, David Kopf Instruments, Tujunga, CA, USA) under stereotaxic surgery assisted with microscope system (V-series otology microscope, JEDMED, St. Louis, MO, USA). Skull suture lines were used to identify brain structure locations. Recordings were obtained using the NeuroNexus Smartbox recording system (20 kHz sampling frequency, NeuroNexus, Ann Arbor, MI, USA) and the TDT Neurophysiology Workstation (24 kHz sampling frequency, Tucker-Davis Technologies, Alachua, FL, USA).
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9

Cranial Window Surgery in Mice

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7-8 week old mice of either sex were used for cranial window surgeries. Animals were anesthetized with a mixture of 40 µl fentanyl (1 mg/ml; Janssen), 160 µl midazolam (5 mg/ml; Hameln) and 60 µl medetomidin (1 mg/ml; Pfizer), dosed in 3.1 µl/g body weight and injected i.p.. After loss of pain reflexes, the fur over the scalp was removed with hair removal cream, eye ointment was applied (Bepanthen, Bayer) and 1% xylocain (AstraZeneca) was injected under the scalp as preincisional local anesthesia. The mouse was then placed in a stereotaxic apparatus (David Kopf Instruments, model 963) equipped with a heating pad (37°C) to preserve body temperature. The dorsal cranium was exposed by removing the scalp and periosteum with fine forceps and scissors to prepare the mouse for M1 ablation or cranial window implantation surgeries. For post surgical care, mice received pain relief (Metacam, Boehringer Ingelheim) and antibiotic (Baytril, Bayer) s.c. injections (0.1 and 0.5 mg/ml respectively, dosed 10μl/g body weight).
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10

Pseudotyped rabies virus infection

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For specific infection and glycoprotein complementation of pseudotyped RV-∆G, helper viruses (120 nl, 1:1 mixture of AAV2/8-CAG-Flex-TVA-mCherry and AAV2/8-CAG-Flex-oG) were stereotaxically injected into the lateral part of the facial motor, hypoglossus, or trigeminal motor nuclei using a stereotaxic instrument (Model 963, David Kopf Instruments, Tujunga, CA, USA) three weeks or longer after the peripheral tissue injection. The viruses were injected at the rate of 30 nl/min with the injection system described above. The stereotaxic coordinates used were for the lateral part of the facial motor nucleus: 5.8 mm posterior, 1.38 mm lateral to the bregma, and 5.2 mm below the brain surface; for the hypoglossus nucleus: 5.8 mm posterior, 0.05 mm lateral to the bregma, and 5.15 mm below the brain surface with an anteroposterior 20° angle from vertical; and for the trigeminal motor nucleus: 4.1 mm posterior, 1.27 mm lateral to the bregma, and 4.6 mm below the brain surface with an anteroposterior 20° angle from vertical. Before suturing the skin, the craniotomy was filled with kwik-sil (World Precision Instruments, Inc., Sarasota, FL, USA) and covered with cyanoacrylate glue (Super Glue, Loctite, Westlake, Ohio, USA).
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