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10 protocols using hydrogen peroxide

1

Immunohistochemical Analysis of Bone Tissue

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Slides of bone tissue were allowed to warm to room temperature, then fixed in 10% neutral-buffered formalin. Membranes in the tissue were permeabilized using 0.25% Triton X-100 (catalog no. 9002-93-1; Sigma-Aldrich, Darmstadt, Germany). Endogenous peroxidase activity was quenched using 3% hydrogen peroxide (Solarbio, Beijing, China), and antigens were retrieved using citrate buffer on a hot plate at 85°C. Non-specific reactivity on slides was blocked by incubating them in 5% bovine serum albumin at room temperature, then primary antibody (diluted 1:100) was added for overnight incubation at 4°C. Next, secondary antibody was applied for 60 min at room temperature. Slides were rinsed with 1 × Tris-buffered saline containing 0.5% Tween-20 (TBST), incubated for 30 min with avidin–biotin peroxidase (diluted 1:200), rinsed again in 1× TBST, then developed using 3,3-diaminobenzidine (Vector Laboratories, Burlingame, CA, United States). Slides were examined using an Olympus BX40 light microscope and photographed at ×20 magnification.
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2

Immunohistochemical Analysis of APEX1 Expression

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All tissue samples were fixed in 10% neutral formalin, embedded in paraffin, sectioned, dewaxed with xylene and dehydrated with gradient ethanol. Then, citric acid buffer was used for high temperature antigen repair, 3% hydrogen peroxide (Solarbio, Beijing, China) was used to block endogenous peroxidase activity, and the samples were incubated at room temperature for 20 min. Next, the slides were incubated with an anti-APEX1 primary antibody (Abcam, Cambridge, UK) at 4°C overnight. The next day, the samples were incubated with an appropriate horseradish peroxidase-conjugated secondary antibody at 37°C for 30 min. After staining with 3, 3′-diaminobenzidine (Solarbio, Beijing, China), the samples were stained with hematoxylin, dehydrated with gradient ethanol, made transparent with xylene, and sealed with neutral gum. The integrated option density (IOD) of APEX1 was chosen to determine the semiquantitative protein expression. ImageJ software (version 1.2; WS Rasband, National Institute of Health, Bethesda, MD, USA) was used to conduct deconvolution and downstream analyses.
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3

Hepatic Histology and Fibrosis Analysis

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Histology of the liver was evaluated by hematoxylin and eosin (HE) staining and Sirius Red stain was used to evaluate liver fibrosis. Immunohistochemistry was used to detect alpha smooth muscle actin (α-SMA) and collagen type I-a1 (COL1a1), and 3% hydrogen peroxide (Solarbio, Beijing, China) was applied to inhibit endogenous peroxidase. We used 10 mM sodium citrate buffer (pH 6.0; Solarbio, Beijing, China) to retrieve antigen. The blocking reagent was Protein Block (Dako, Denmark) solution. Primary antibodies of α-SMA (diluted 1: 100; ab32575, Abcam, Cambridge, UK) and Collagen I (diluted 1: 100; AF7001, Affinity Biosciences, Cincinnati, OH, USA) diluted in Protein Diluent were incubated with slices at 4°C overnight. Polymer-horseradish peroxidase anti-rabbit (Dako) antibody was used as secondary antibody.
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4

Immunohistochemical Analysis of Cell Proliferation and Adhesion

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HCT116 and LOVO cells were treated with MSC-CM or control medium for 24 h, and then fixed in 2% paraformaldehyde. The fixed cells or 5 μM-thick paraffin-embedded mouse colon sections were stained using antibodies against proliferation maker Ki67 (Bo Ao Seng, Beijing, China) or cell adhesion maker E-cadherin (Cell Signaling, Beverly, MA, USA). Briefly, the sections were dewaxed and rehydrated through a graded ethanol series, antigen retrieval was performed in 10 mM citrate buffer (pH 6.0) for 15 min in a microwave, then the slides were incubated with 3% hydrogen peroxide for 10 min (Solarbio, Beijing, China), blocked in 5% BSA for 1 h, incubated with the primary antibodies overnight at 4 °C, followed by incubation with biotinylated secondary antibodies conjugated to streptavidin-horseradish peroxidase (ZhongShan Golden Bridge Biotechnology, Beijing, China). Immunoreactivity was visualized using DAB solution. For the tissue sections, the average number of Ki67 and E-cadherin positive cells was determined from five consecutive sections from the tumor region.
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5

Immunohistochemical Analysis of Tumor Markers

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Samples collected from human patients and nude mouse model tumor tissue sections were de-paraffinized in xylene and rehydrated with gradient ethanol. After washing with double-distilled water, the tissue sections were incubated with 3% hydrogen peroxide (Solarbio, Beijing, China) for 10 min and antigenic repair was performed with sodium citrate antigen retrieval solution (Solarbio, Beijing, China). The sections were then blocked with 50% goat serum for 1 h and incubated with primary antibodies anti-E-cadherin (Proteintech, USA, 1:100), anti-Vimentin (Cell Signaling, USA, 1:200), anti-Gankyrin (Abcam, UK, 1:200) or anti-YAP1 (Proteintech, USA, 1:200) overnight at 4 °C before incubation with a horseradish peroxidase (HRP)-conjugated secondary antibody (Zhongshan Technology, Beijing, China) for 30 min at 37 °C. The tissue sections were stained with DAB (Zhongshan Technology) staining solution and counterstained with hematoxylin (LABEST, Beijing, China) for 10 s. Photographs were obtained using a Zeiss microscope (Carl Zeiss, Oberkochen, Germany).
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6

Immunohistochemical Analysis of Mouse Xenografts

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The mouse xenograft tumors were fixed in paraformaldehyde for 1 h, followed by conventional paraffin‐embedding and sectioning (4 μm), and drying at 60℃. Paraffin sections were dewaxed with xylene and graded ethanol, and rinsed with distilled water. The slides were boiled in sodium citrate buffer (pH = 6.0, Solarbio, Beijing, China) for 10 min for antigen recovery. The sections were incubated in 3% hydrogen peroxide (Solarbio) for 10 min to block endogenous peroxidase activity and in 5% normal goat serum (ZGB‐BIO, Beijing, China) to block nonspecific protein binding sites. The sections were then incubated with antibodies against cleaved‐caspase‐3 (1:500; NB100‐56113, Novus Biologicals) and β‐Tubulin‐III (ab52623, RRID: AB_2819160, 1:800; Abcam) overnight at 4°C and subsequently incubated with goat antirabbit biotin‐conjugated secondary antibody (ab205718, 1:800; Abcam) for 0.5 h at room temperature. The reaction products were characterized using diaminobenzidine (Sigma‐Aldrich Chemical Company, St Louis, MO, USA). Nuclei were counted lightly with hematoxylin (Solarbio), and immunostaining was observed under a light microscopy (Olympus Optical Co., Ltd., Tokyo, Japan). The mean OD values of different sections were compared by Image‐pro Plus software.
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7

Tumor Proliferation Quantification

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Tumor sections were inactivated with hydrogen peroxide (Solarbio), and then mixed with 5% serum (Solarbio). Next, the sections were incubated with SKA2 (ab75345, 1:1000, Abcam) and nuclear proliferation marker (ki‐67) (ab15580, 1:2000, Abcam) primary antibodies. Secondary antibody (ab6721, 1:500, Abcam) was then added. After 1 h, the sections were stained according to the instructions of the DBA kit (Solarbio) and then viewed at 100× magnification under a microscope.
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8

STZ-Induced Diabetic Tissue Damage

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STZ (Sigma, St. Louis, MO), hydrogen peroxide (Solarbio Science & Technology CO., Ltd, Beijing, China), LiCl (Royalton, Dalian, Liaoning Province, China ), xylene, hematoxylin, eosin Y, alcohol, ethanol, terminal deoxyribonucleotide transferase-mediated dUTP-digoxigenin nick end labeling (TUNEL) assay kit (In Situ Cell Death Detection Kit, Roche, Mannheim, Germany), Triton X-100 (Beyotime Institute of Biotechnology, Nantong, Jiangsu Province, China), Total RNA Extraction Kit (Tiangen Biotech Co., Ltd., Beijing, China), Super M-MLV Reverse Transcriptase and 2×Power Taq PCR MasterMix (Bioteke Corporation, Beijing, China), cDNA synthesis kit (IScript, BioRad, U.S.A.), RNase solid scavengers (Tiandz, Inc., Beijing, China), Powder agarose (D1 LE, Hispanagar, Spain), 50×TAE buffer (50 mM EDTA, 2 M Tris base, and 1 M glacial acetic acid).
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9

Fucoidan Extraction and Characterization

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Fucoidan standard extracted from U. pinnatifida (Fstd) was purchased from Sigma-Aldrich (Buchs, Switzerland). Sugar standards including L-fucose, D-galactose, and D-glucose were purchased from Macklin (Shanghai, China). Synthetic antioxidants BHA, sodium hydroxide (≥99.0%), and ascorbic acid were also purchased from Macklin (Shanghai, China). Anhydrous ethanol (≥99.0%), hydrochloric acid (4 M), trifluoroacetic acid (≥99.0%), ferrous sulfate (9 mM), hydrogen peroxide (0.3%), ethanolic solution of salicylic acid (5 mM), potassium ferricyanide, 1,1-diphenyl-2-picrylhydrazyl radical 2,2-diphenyl-hydrazyl (DPPH) and dialysis bags were purchased from Solarbio (Beijing, China). All other chemicals used in this study were of analytical grade.
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10

Immunohistochemical Analysis of Immune Markers

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Rabbit anti-human CD2AP monoclonal antibody and mouse anti-human CD123 monoclonal antibody were bought from Abcam, USA, and rabbit anti-human IRAK1 monoclonal antibody, rabbit anti-human IRF7 monoclonal antibody, mouse anti-human TLR7 monoclonal antibody, and rabbit anti-human TLR9 monoclonal antibody were bought from CST, USA. Hydrogen peroxide, antigen retrieval solution, HRP-conjugated secondary antibody, and DAB chromogenic solution for immunohistochemistry were purchased from Beijing Solarbio Life Sciences.
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