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10 protocols using gw7647

1

Maturation Cocktail for hiPSC-CMs

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Day 10 WT or ERRα/γ KO hiPSC-CMs were cultured with the previously reported maturation cocktail15 (link) for 7 days with minor modification as described below. CDM3 media was supplemented with 4 nM 3,3′,5-triiodo-L-thyronine (Sigma-Aldrich, T5516-1MG), 100 ng/mL dexamethasone (Sigma-Aldrich, D4902-25MG), 1 μM GW7647 (Cayman, 10008613), 200 μM palmitate (P9767, Sigma-Aldrich)-conjugated with fatty acid-free bovine serum albumin (Sigma-Aldrich, A6003-100G), and 500 μM carnitine (C0283-5G, Sigma-Aldrich).
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2

Modulation of Liver Lipid Metabolism

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Tg(fabp10a:pt-β-catenin) larvae were treated with 0.1% dimethyl sulfoxide (DMSO), 1 µM GW7647 (Cayman Chemical, Ann Arbor, MI), 2 µM K-975 (MedChemExpress, Princeton, NJ), 15 µM Etomoxir (Cayman Chemical, Ann Arbor, MI), 2 µM AG1478 (ApexBio, Houston, TX), or 7 μM CAY10599 (Cayman Chemical, Ann Arbor, MI) for 48 h from 12 or 13 days post-fertilization (dpf). Compounds were refreshed every 24 h. The larvae were fed prior to the drug treatments but fasted during the treatments. They were harvested at 14 or 15 dpf for subsequent analyses.
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3

Intestinal Epithelial Cell Culturing

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The human intestinal epithelial cell lines HT–29 was obtained from the American Type Culture Collection (ATCC, Rockville, MD). HT–29 cells were cultured in DMEM supplemented with 10% heat-inactivated fetal calf serum (FCS), 2 mM L-glutamine (Sigma), 1X Non essential Amino acid (Invitrogen), penicillin (50 IU/ml) and streptomycin (50 μg/ml) in an humidified atmosphere containing 10% CO2 at 37°C. After seeding, cells were grown 48h in 6 or 12 wells plate in antibiotic-free medium at 3.25X105 and 6.5X105 respectively. Medium was changed just before the addition of bacterial or reagents for 6h.
Rosiglitazone (used as positive control), GW9662, GW6471 and GW7647 (Cayman chemicals) were dissolved in DMSO following the manufacturer’s instructions and diluted at 100μM in antibiotic-free DMEM. They were used at a final concentration of 10μM except for GW6471 at 1μM. The antagonists (GW9662, GW6471) were added 1h before challenging with rosiglitazone or GW7647 respectively.
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4

Detailed Reagents and Suppliers

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AMI, VA, TET, cyclosporin A (CsA), chlorpromazine (CPZ), ethinyl estradiol (EE), paraquat (PQ), isoniazid (ISND), acetaminophen (APAP) and bovine serum albumin (BSA) were purchased from Sigma (Sigma, Zwijndrecht, The Netherlands). Williams E medium (WEM) supplemented with Glutamax, penicillin/streptomycin (pen/strep), D-glucose, phosphate buffered saline (PBS) were obtained from Invitrogen (Invitrogen, Bleiswijk, The Netherlands). GW7647, rosiglitazone, and L165,041 were purchased from Cayman Chemical (Cayman Chemical, Ann Arbor, MI, USA). G418-disulfate was obtained from Duchefa Biochemie (Duchefa Biochemie, Haarlem, The Netherlands).
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5

THC Administration & PPAR Compound Prep

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Δ9-THC was provided by the NIDA pharmacy (Baltimore, MD). The stock solution was dissolved in ethanol at a concentration of 50 mg/ml. We diluted this solution as needed for experimental use in a 5% cremophor (Sigma-Aldrich, St. Louis, MO) saline solution. PPAR antagonists and agonists including GW9662, GW6471, pioglitazone, and GW7647 were purchased from Cayman Chemical (Ann Arbor, MI). Each compound was dissolved in a mixture of 2% DMSO, 3% tween-80 and 95% saline.
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6

Agonist-Induced APOF mRNA Expression

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C3A cells, derived from the human hepatocellular carcinoma HepG2 cell line, were purchased from American Type Culture Collection (ATCC, Manassas VA). Cells were grown to near confluence in Eagle’s minimum essential media (MEM) containing 10% fetal calf serum. For experiments, cells were washed with MEM then incubated with the indicated agonist diluted in either MEM containing 5% lipoprotein-deficient human serum or in Opti-MEM (Life Technologies, Grand Island, NY). After the indicated time, cells were washed with PBS and total RNA was extracted. There was no consistent difference in the response of APOF mRNA levels to agonist between these two media conditions. 22(R)- and 22(S)-hydroxycholesterol, chenodeoxycholate, 9-cis retinoic acid, and actinomycin D were purchased from Sigma Aldrich (St. Louis, MO). Clofibrate, GW3965, and GW7647 were from Cayman Chemicals (Ann Arbor, MI). Stock solutions of nuclear receptor agonists were prepared in DMSO.
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7

Assay for Nuclear Receptor Activation

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GW4064, (Z)-guggulsterone (GS), T0901317, 1α,25-vitamin D3, GW7647, and GW1929 were obtained from Cayman Chemical (Ann Arbor, MI, USA). CDCA, lithocholic acid, and Fast-blue BB salt were purchased from Sigma (St. Louis, MO, USA). GW501516 was from ChemScene LLC (Newark, NJ, USA). All-trans retinoic acid and 9-cis-retinoic acid were from FUJIFILM Wako Pure Chemical (Osaka, Japan). BMP-2 was from Miltenyi Biotec. (Bergisch Gladbach, Germany). Naphthol AS-MX phosphate was from Nacalai Tesque (Kyoto, Japan). Amino acid derivative and the coupling reagents were from Watanabe Chemical (Hiroshima, Japan) or Peptide Institute (Osaka, Japan). All other chemicals were from Tokyo Chemical Industry (Tokyo, Japan), FUJIFILM Wako Pure Chemical, and Aurora Fine Chemicals (San Diego, CA, USA) unless otherwise stated.
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8

Modulation of PPARα Signaling Pathways

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The Pparα agonists WY-14643 and GW7647 were purchased from Cayman Chemical Company (Michigan, USA). For ex vivo experiments, WY-14643 and GW7647 were dissolved in DMSO at 0.1%–0.2% final concentration. The PrimeScript RT Reagent Kit with gDNA Eraser was purchased from TaKaRa, Japan. The dual luciferase assay system was from Promega (Madison, WI). The EMSA Assay kit and ChIP Assay kit were from Beyotime (Shanghai, China). Antibodies against γ-H2a.x (#2577s) and Prkcd (#9616) were from Cell Signaling Technology (Danvers, MA, USA). Antibodies against Pparα (sc-398394), β-actin (sc-47778), Rad51 (sc-398587), goat anti-rabbit immunoglobulin G-horseradish peroxidase (IgG-HRP) (sc-2004), and goat anti-mouse IgG-HRP (sc-2005) were purchased from Santa Cruz Biotechnology (CA, USA). Gapdh antibody (BM-1623) was from Boster Biological Technology (Wuhan, China). Lmnb1 antibody (A1910) was purchased from ABclonal (MA, USA).
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9

PFAS Chemicals Procurement and Purity

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PFAS chemicals (Fig. 1) were purchased from Sigma Aldrich, i.e., perfluoro propanoic acid (PFPrA) (> 90%, CAS 422-64-0), perfluoropentanoic acid (PFPeA) (> 90%, 2706-90-3), perfluoro octane sulfonamide (PFOSA) (> 90%, 754-91-6), fluorotelomer sulfonic acids 8:2 FTSA (> 90%, 39108-34-4) and 6:2 FTSA (> 90%, 27619-97-2), and 6:2 fluorotelomer alcohol (6:2 FTOH) (> 90%, 647-42-7). SR 12813 (purity ≥ 98%), troglitazone (purity ≥ 98%), and GW7647 (purity ≥ 98%) were purchased from Cayman (Ann Arbor, USA
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10

Δ9-THC and PPAR Modulator Preparation

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Δ9-THC was provided by the NIDA pharmacy (Baltimore, MD). The stock solution was dissolved in ethanol at a concentration of 50 mg/ml. We diluted this solution as needed for experimental use in a 5% cremophor (Sigma-Aldrich, St. Louis, MO) saline solution. PPAR antagonists and agonists including GW9662, GW6471, pioglitazone, and GW7647 were purchased from Cayman Chemical (Ann Arbor, MI). Each compound was dissolved in a mixture of 2% DMSO, 3% tween-80 and 95% saline.
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