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12 protocols using mtt dye

1

Cytotoxicity Evaluation of FA-3WJ/GDENs

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To evaluate cytotoxicity of FA-3WJ/GDENs, 1 × 104 of HEK293 cells, Raw. 264.7 macrophage and KB cells were seeded in individual 96-well plates 1 day ahead treatment and maintained at 37 °C in 100 µL full medium. FA-3WJ/GDENs and lipofectamine were diluted and added to cells in quadruplicate to a final concentration 80 µg/mL then followed 2-fold series dilution to 40, 20, 10 and 5 µg/mL groups. After 24 hours incubation, 15 µL MTT dye (Promega) were add to individual well then incubate in dark for 4 hours. 100 µL Solubilization solution/Stop Mix (Promega) were add to individual well for dissolving the crystal in dark. Once crystal fully dissolved, OD570 were measured by plate reader (BioTek) following manufacture procedures. Untreated groups were used for standardization as 1 and data were process and fit with non-linear regression in Prism 7.
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2

Autophagy Regulation in Ovarian Cancer

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The human OvCa cell lines SKOV3, SKOV3 TR, HeyA8 and HeyA8 MDR were obtained on an MTA from MD Anderson Cancer Center, Houston, TX. C13 and OV2008, were obtained on a MTA from Dr. Barabara Vanderhyden (Ottawa Hospital Research Institute, Ottawa, Canada). OVCAR3 and CAOV3 were obtained from the American Type Culture Collection (ATCC) (Manassas, VA). All cell lines were cultured according to the providers’ recommendations at5% CO2 and at 37°C. Quinacrine was obtained from Sigma-Aldrich. MTT dye was obtained from Promega. Carboplatin was purchased from Calbiochem (San Diego, CA). Anti-LC3B, anti-PARP, anti-p62, anti-PDI and anti GAPDH antibodies were purchased from Cell Signaling Corporation. Anti-NBR antibody was purchased from Genetex. Anti-p53 (DO-1) antibody is from Santa Cruz Biotech.
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3

Cell Viability Assay Protocol

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A549 (American Type Culture Collection, ATCC), HSAEC (ATCC), HeLa (ATCC) and primary cervical epithelial (ATCC) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum at 37 °C humidified air and 5% CO2. Cells were seeded (7500/well (A549, HSAEC) and 2000/well (HeLa, primary cervical epithelial cells)) in 96-well plates and allowed to attach overnight before being treated with the compounds or the solvent control (0.5% DMSO). The cells were incubated for 48 h followed by addition of MTT dye, according to the manufacturer’s protocol (Promega). IC50 values were calculated using GraphPad prism software 9.2.0.
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4

UVC Irradiation Dose-Response Assay

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In total, 10,000 cells/well were seeded in 96 well-plates 24 h prior to UVC. Initial dosis-finding with increasing UVC irradiation was performed with A375 wildtype cells in between 0 and 500 J/m2. Non-UVC-treated cells and wells containing only DMEM served as control and blank, respectively. After 48 h incubation in 100 µL DMEM, 15 µL of MTT dye solution per well were added. After 4 h incubation 100 µL stop solution (MTT dye and stop solution from Promega, Madison, WI, USA) were added, and plates were incubated overnight. Absorptions were captured with Tecan Sunrise (Tecan Trading AG, Männedorf, Switzerland) and the differences between the readings of two wavelengths (550 nm and 650 nm) were indicative of measured cellular metabolic activity. All results were set in relation to the respective non-irradiated cells (set as value 1).
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5

Modulation of Nitric Oxide Production in Macrophages

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RAW264.7 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 10% fetal bovine serum at 37 °C humidified air and 5% CO2. Cells were seeded (2 × 104/well) in 96-well plates and allowed to attach for 24 h before being treated with the compounds (1 and 2) or the solvent control (0.5% DMSO) for 1 h, followed by the addition of LPS at 1 μg/mL. Non-stimulated cells (no LPS) were tested simultaneously. The production of NO in the cell supernatant was measured after 24 h by measuring the nitrite concentration, which is an oxidative product of NO. A total of 50 μL of the supernatant was mixed with the Griess reagent using the manufacturer’s protocol (Promega) and the absorbance was measured at 540 nm. The nitrite concentration was derived from a calibration curve generated from a fresh nitrite standard solution. Cell viability was measured under the same seeding conditions and time points, using MTT dye following the manufacturer’s protocol (Promega).
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6

Colorectal Cancer Cell Viability Assay

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Human colorectal cancer cells; HCT116 parental, HCT116HIF−1α−/−HIF−2α−/−, HCT116HIF−1α−/−, HCT116HIF−2α−/−, HCT116WT KRAS and HCT116VEGF−/− (8,000 to 10,000 cells/well), and CCD 841 CoN colon cells (3,000 cells/well) were seeded in 96-well plates, allowed to attach overnight and then treated with different concentrations of dolastatin 15 (1) and solvent control (0.5% DMSO). The cell viability was measured 48 h following treatment with MTT dye using manufacturer’s protocol (Promega).
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7

Evaluating Compound 5 on Colorectal Cancer

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Human colorectal cancer cell lines HCT116, HCT116HIF-1α−/−HIF-2α−/− and HCT 116WT KRAS were cultured in Dulbecco’s modified Eagle medium (DMEM) supplemented with 10% Fetal Bovine Serum and maintained in 5% CO2 at 37 °C. The cells were seeded in a 96-well plate (10,000 cells/well), and treated with different concentrations of 5 after 24 h. The cell viability was measured 48 h following treatment with MTT dye using manufacturer’s protocol (Promega).
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8

Antiproliferative Evaluation of Dysidazirine Compounds

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Human colon cancer cells HCT116 were used as a representative model system to probe for antiproliferative activity. HCT116 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 10% fetal bovine serum at 37 °C humidified air and 5% CO2. Cells were seeded (8000 cells/well) in 96-well plates, allowed to attach overnight and treated with (4E)-R-dysidazirine carboxylic acid (1), methyl ester (2), and the solvent control (0.5% DMSO). Cell viability was measured after 48 h, following treatment with MTT dye using the manufacturer’s protocol (Promega, Madison, WI, USA). IC50 values were calculated from variable slope fitting for a dose response curve using GraphPad Prism software. Gatorbulin-1 was tested at the same time (IC50 0.80 μM) [11 (link)] and served as a positive control.
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9

Quantifying Jurkat Cell IL-2 and Viability

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Jurkat cells were grown in 96-well plates (100,000 cells/well), in RPMI-1640 medium in the presence of PMA (80 nM, Sigma-Aldrich, added as a solution in DMSO), PHA (10 μg/mL, Sigma-Aldrich, added as a solution in PBS), and varying concentrations of 2 or 3 (added as 100× freshly prepared stock solutions in EtOH), following the procedure of Fischer et al.[28 (link)] The DMSO content of the culture wells was kept below 0.25% as it was found to be toxic to Jurkat cells at higher levels. After 24 h incubation at 37 °C in a humidified atmosphere containing CO2 (5%), the IL-2 content of the supernatants was quantified using a hIL-2 alPHALISA kit and EnVision detector (Perkin Elmer). To quantify viability, cells were grown under the same conditions, and then developed with MTT dye according to the manufacturer’s protocol (Promega).
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10

MTT Assay for Cell Viability

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Cells were seeded onto 96-well plates in the medium with 10% FBS at 7,000 cells per well
and PIERCE1 siRNA were transfected with lipofectamine RNAiMAX reagent
during 36 h. 3-(4,5-di-methylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) dye
(Promega, Madison, WI, USA) were dissolved at concentration of 5 mg/ml in PBS. After MTT
solution added, cells were incubated for 4 h at 37°C, then, quenched with DMSO. Plates
were shaken for 30 min at room temperature, and the absorbances were read at 560 nm.
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