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Gateway vector pcr8 gw topo

Manufactured by Thermo Fisher Scientific

The GATEWAY vector pCR8/GW/TOPO is a cloning vector used for the GATEWAY cloning system. It allows for the rapid and efficient transfer of DNA sequences between multiple vectors. The vector contains a TOPO cloning site for initial DNA insertion and GATEWAY attL1 and attL2 recombination sites for subsequent transfer of the DNA to other GATEWAY-compatible vectors.

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6 protocols using gateway vector pcr8 gw topo

1

Generating miR396a and GRF Overexpression Vectors

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35S:miR396a was generated by fusing 400 bp of MIR396a precursor to the 35S promoter in the pCHF3 binary plasmid [65 (link)]. ANT: miR396a was generated by replacing the 35S viral promoter in the previous vector with the ANT promoter (5.8 kb upstream regulatory sequences) [66 (link)].
AtGRF2, AtGRF5, AtGRF7, and AtGRF8 genomic regions were amplified by PCR using the following primers: AtGRF2, fw: 5′-AACATTTGGTTGGTAATGTCAGCGT-3′ rev: 5′-GGTTGTGTAATGAAAGTAATCGCCA-3′, AtGRF5, fw: 5′-GTATGTTCAAATAATGTGAATCGTGG-3′ rev: 5′-GCTACCTGAGAAAATAAATTTAAACT-3′ AtGRF7, fw: 5′-GAATCTTGTTCTTCAGAAAGATGAAC-3′ rev: 5′-AACCTGGCTGCTTTCGTCGGAC-3′ and, AtGRF8, fw: 5′-GTTTGTTTGTTACATTGCCGTTT-3′ rev: 5′-GCTTGAGCTTCTGCTGCA-3′. The PCR fragments were cloned into the GATEWAY vector pCR8/GW/TOPO from Invitrogen and transferred via LR reaction into the destination vector pMDC107 [67 (link)]. Expression vectors were introduced into Arabidopsis thaliana ecotype Col-0 by floral dip transformation [68 (link)]. Transformant plants were select on MS medium with Hygromycin (10 ug/mL).
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2

Cloning and Expression of AlySEP3 in Arabidopsis

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AlySEP3 with upstream region was amplified using primers Fw 5′-CTTGACTAGCCCACAACACTTC-3′ and R 5′-AATAGAGTTGGTGTCATAAGGTAACC-3′. The polymerase chain reaction fragments were cloned into the GATEWAY vector pCR8/GW/TOPO from Invitrogen and transferred through LR reaction into the destination vector AM884381 (pGREEN-GW-eGFP; Zhong et al. 2008 (link)). Expression vector was introduced into A. thaliana ecotype Col-0 by floral dip transformation. Transformant plants were selected on MS medium with BASTA. For comparison, we used previously generated pSEP3::SEP3-GFP plants (4.1 kb promoter; Smaczniak et al. 2012 (link)).
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3

Isolation and Cloning of Triterpene Biosynthetic Genes

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The full lengths of PgDDS (GenBank accession number AB122080), CYP716A47 (GenBank accession number JN604536), and CYP716A53v2 (GenBank accession number JX036031) used in this study were isolated by PCR. The primers used for isolation of the open reading frame sequences of PgDDS, CYP716A47, and CYP716A53v2 are follows. The forward primer to amplify the PgDDS gene was 5′- ATG TGG AAG CTG AAG GTT GCT CAA GGA-3′, and the reverse primer used was 5′- TTA AAT TTT GAG CTG CTG GTG CTT AGG C-3′. The forward primer used for the CYP716A47 gene was 5′- ATG GTG TTG TTT TTC TCC CTA TCT-3′, and the reverse primer was 5′- TTA ATT GTG GGG ATG TAG ATG AAT-3'. The forward primer used for CYP716A53v2 was 5′- ATG GAT CTC TTT ATC TCA TCT CAA-3′, and the reverse primer was 5′- TTA AAG CGT ACA AGG TGA TAG ACG-3′. To generate overexpression, the open reading frame sequences of these genes were cloned into GATEWAY vector pCR8/GW/TOPO (Invitrogen, Carlsbad, CA) and then transferred to the pZIP-Bar destination vector, in which PgDDS, CYP716A47, and CYP716A53v2 were driven by the 35S Cauliflower mosaic virus (CaMV) promoter. The vector was inserted into competent cells of Agrobacterium tumefaciens GV3101 and transformed into tobacco plants by using the same methods as in the study by Han et al [33] (link).
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4

Cloning and Overexpression of TcOSC1 Gene

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The full-length sequence of T. coreanum TcOSC1 gene (GenBank accession number, MK351896) was isolated by PCR using primers 5'-ATG TGG AAG CTG AGA ATA GGT GA-3' and 5'-TTA GGT TTC TTG TTT TGG TAA C -3'. The open reading frame of TcOSC1 was cloned via GATEWAY vector pCR8/GW/TOPO (Invitrogen) and transferred into binary destination vector pB7WG2, placing it under the control of the CaMV 35S promoter (Fig. 2A). Eventually, the overexpression constructs harboring TcOSC1 was inserted into Agrobacterium tumefaciens LBA4404 strain by the heat shock method.
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5

Cloning and Luciferase Assay of Rice Promoters

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To construct reporter plasmids containing the luciferase (LUC) reporter gene under the control of various promoters, promoter fragments of OsCYP707A6 (–1516 to –1), OsNAP (–1502 to –1), OsABF4 (–1516 to –1), OsSGR (–1514 to –1), and OsNYC1 (–1508 to –1) were cloned into the pGreenII-0579 vector, which contains the LUC reporter gene at the C-terminus. For the effector plasmids, the cDNAs of OsMYB102, OsNAP, and OsABF4 were cloned into the pCR8/GW/TOPO Gateway vector (Invitrogen). Then, these cDNAs were recombined into the pEarley203 vector (Earley et al., 2006 (link)). The reporter (4 μg) and effector plasmids (8 μg) were co-transfected into 5×104 rice protoplasts by the polyethylene glycol-mediated transfection method (Yoo et al., 2007 (link)). Transfected protoplasts were then suspended in protoplast culture medium (0.4 mM mannitol, 4 mM MES buffer, and 15 mM MgCl2, pH 5.8) and maintained in darkness for 16 h. The LUC activity in each cell lysate was determined using the Luciferase Assay System Kit (Promega).
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6

Purification of Laccase Fusion Proteins

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The coding sequences of ChLAC4, ChLAC5, ChLAC8, and ChLAC15 lacking the stop codon were amplified using the primers listed in table S2 and introduced into the pCR8/GW/TOPO gateway vector (Invitrogen), followed by recombination to the pEarleyGate103 (69 (link)) binary vector with green fluorescent protein (GFP) and 6xHis C-terminal tags driven by the CaMV 35S promoter. Resulting vectors were transformed into Agrobacterium tumefaciens GV3101. Transient gene expression in tobacco (N. benthamiana) leaves by agroinfiltration was performed following the procedures of Sparkes et al. (70 (link)). Infiltrated leaves were harvested 3 days after infiltration, and cell wall proteins were extracted as described above. The supernatant was desalted on a PD-10 Desalting Column (GE Healthcare). The LAC-GFP-6xHis fusion proteins were purified on Ni–nitrilotriacetic acid resin according to the manufacturer’s manual (Thermo Fisher Scientific). Protein concentrations were measured using the Bradford Protein Assay (71 (link)). About 250 ng of recombinant protein was added to the reaction for laccase activity assay as described above.
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