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Mass spectrometry

Manufactured by Bruker
Sourced in Germany

Mass spectrometry is an analytical technique used to measure the mass-to-charge ratio of ions in a sample. It provides information about the molecular composition and structure of compounds.

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4 protocols using mass spectrometry

1

Characterization of Nanoparticle Conjugates

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The molecular weight of synthetic probe precursors was determined by mass spectrometry (Bruker Daltonics, MA, USA). Particle size was determined by transmission electron microscopy (JEOL, Japan). Gel electrophoresis (BIO‐RAD, CA, USA), zeta potentiometer monitoring (Malvern, UK) the potential of the probe and multispectral laser imaging system (Azure Sapphire, USA) used to detect the conjugation of NPs and antibody was successful. Gd content in solution was determined by inductively coupled plasma optical emission spectrometry (Thermo Fisher Scientific, USA), and Gd content in mouse tissue was calculated. Absorption spectra were analyzed using a Multiskan Spectrum Microplate Spectrophotometer (Thermo Fisher Scientific, USA).
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2

Antimicrobial Peptides: Synthesis and Evaluation

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bLF (20% iron saturated) was kindly provided by DMV International (Veghel, The Netherlands). LF derived peptides (Table 1) were synthesized by solid phase peptide synthesis using Fmoc chemistry with a Siro II synthesizer (Biotage, Uppsala, Sweden) according to the manufacturer’s protocol. Purification by Reverse Phase-HPLC was conducted as described previously (Bolscher et al. 2009 (link)). Identity of the peptides was confirmed by mass spectrometry (Bruker Daltonik GMBH, Bremen, Germany) and molar concentrations were calculated based on their weight.

Sequences and characteristics of the peptides investigated

PeptideaPrimary structureChargeMBC (μM)b
Y. e.Y. p.
LFampin265–284DLIWKLLSKAQEKFGKNKSR+ 46.3ND
LFcin17–30FKCRRWQWRMKKLG+ 60.8ND
LFchimerac+ 120.21.6
LFampin265–284 and LFcin17–30DLIWKLLSKAQEKFGKNKSRand FKCRRWQWRMKKLG+ 100.8ND

Y. e.: Y. enterocolitica, Y. p.: Y. pseudotuberculosis

aThe purity of the peptides was at least 95% and the authenticity of the peptides was confirmed by MALDI-TOF mass spectrometry

bMinimal bactericidal concentration (MBC), in 1 mM phosphate buffer (from Sijbrandij et al. 2017 (link)). ND: not detected up to 50 µM peptide

cA single C-terminal lysine amide (K) was substituted at the α- and ε-amino groups with the two peptides via the C-terminal site, while leaving the two N-termini as free ends

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3

Synthesis and Characterization of Fluorinated Compounds

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An X-4 melting point apparatus with a binocular microscope was used to determine the melting point (m.p.) of the target compound 6au. HRMS were obtained using mass spectrometry (Bruker Daltonik, Germany). Using tetramethylsilane as the internal standard, the 1H-NMR and 13C-NMR data of the target compound were measured using a Bruker AV-500 nuclear magnetic resonance instrument (compounds 6au were dissolved in CDCl3 or DMSOd6). The positive fluoxetine used in the pharmacological experiment was of a high-purity standard which can be directly used in pharmacological experiments. All chemical reagents used in the chemical experiment were of analytical reagent grade or chemically pure, which were directly used in the experiment without further purification. The NMR and HRMS spectra of compounds 4, 5, and 6au are presented in Figures S2–S68.
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4

Characterization of Compound Mixture

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The major compound (a mixture of two compounds, CA+24-MCA) was characterized by 1H NMR (400 MHz), 13C NMR (100 MHz) (Bruker, Germany) and mass spectrometry (Thermo Fisher Scientific, USA).
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