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Nis element basic research software

Manufactured by Nikon
Sourced in Germany, Japan

NIS Element Basic Research software is a comprehensive imaging software suite designed for scientific and research applications. It provides a range of tools and features to capture, analyze, and manage digital images from a variety of microscopy and imaging techniques. The software offers a user-friendly interface and a robust set of image processing and analysis capabilities.

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2 protocols using nis element basic research software

1

Evaluating Immune Response via IL-13Rα2 Imaging

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Raw 264.7 cells were cultured in complete growth medium (DMEM + 10% FBS + 1% Penicillin/Streptomycin) at 37 °C with 5% CO2. One day before the experiment, cells were seeded onto sterile coverslips in a 6-well plate at a density of 4 × 105 cells/mL and incubated overnight. Then cells were treated with or without LPS (100 ng/mL) for 24 h in serum-free media.
For immunofluorescence staining,37 (link) cells on coverslips were fixed with 4% paraformaldehyde for 30 min. Goat anti-mouse IL-13Rα2 antibody (1:5000) was used to detect IL-13Rα2, and followed by incubation with Alexa Fluo 594 chicken anti-goat secondary antibody, (1:5000, Invitrogen, Waltham, MA) for 30 min. IgG control was performed excluding the primary antibody incubation. Cell nuclei were countered stained with DAPI.
For probe binding experiments, cells treated with or without LPS were fixed with 4% paraformaldehyde for 30 min and incubated with 1 μM IL-13-functionalized Gd3N@C80 MRI probe labeled with TAMRA and washed with PBS twice. Cell nuclei were counterstained with DAPI. Fluorescence images were taken with a fluorescence microscope (LSM 510-UV, Carl Zeiss, Germany) and processed by NIS Element Basic Research software (Nikon Instruments Melville, NY) with the exact same setting for infected and sham tibia samples following our published protocols.38 (link)
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2

Quantifying Macrophage Circularity in DRG

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At four weeks after TG-C treatment, the rats were anesthetized with isoflurane before perfusion. The rats were perfused, and the left lumbar DRGs (L4) were harvested and post-fixed with 4% Paraformaldehyde. Upon completion of dehydration, DRGs sections (10 µm) were immuno-stained with primary antibody at 4 ℃ O/N and secondary detection was performed 1 hr at RT. The circularity (4π[area]/[perimeter] 2 ) was quantified by calculating the area (black) and the perimeter (red) of a macrophage using the NIS-element basic research software (Nikon, Tokyo, Japan). 30 The experimenter remained blind to the drug type and experimental group. Antibodies are shown in supplementary Table 3 (see supplementary material).
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