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4 protocols using cd103 pe cy7

1

Multicolor Flow Cytometry Panel

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The following anti-mouse antibodies were used: CD3-Pacific Blue, CD4-PEridinin chlorophyll protein (PerCP)-Cy5.5, CD8-allophycocyanin (APC)-Cy7, CD69-phycoerythrin (PE), CD44-fluorescein isothiocyanate (FITC), CD62L-APC, CD103-PE-Cy7, CD69-FITC, IFN-γ-APC, IFN-γ-BV510, IL-17-PE-Cy7, IL-17-BV650, CD11b-APC-Cy7, CD11c-APC, CD80-FITC, CD86-PerCP-Cy5.5, CD40-PE, CD4-PE, CD4-APC, CD4-FITC, CD3-BV510, and CD3-BV650 from Biolegend, USA.
Alexa Fluor 647 secondary antibody or isotype control IgG-APC was from Abcam.
p-P38, P38, pSTAT3, pSTAT4, and β-tubulin were obtained from Cell Signaling Technology.
I-A(b)4-17ESAT-6 MHC-II tetramer to analyze the M. tuberculosis-specific CD4+ T cell responses was procured from NIH Tetramer Facility, USA (USA).
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2

Multiparametric Flow Cytometry of Immune Cells

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Following antibodies were used for this study:
Anti-Mouse: CD3-Pacific Blue, CD4-PErCPCy5.5, CD8-APCCy7, CD69-PE, CD44-FITC, CD62L-APC, CD103-PeCy7, CD69-FITC, IFNγ-APC, IFNγ-BV510, IL17-PECy7, IL17-BV650, CD11b-APCCy7, CD11c-APC, CD80-FITC, CD86-PerCPCy5.5, CD40-PE, CD4-PE, CD4-APC and CD4-FITC, CD3-BV510, CD3-BV650 from Biolegend, USA.
Anti-human: CD3-PE, CD4-APCCy7, CD8-Pacific Blue, CD45RO (PerCPCY5.5), CCR7 (PeCy7), CD69 (Alexa Fluor 700) from BD Biosciences.
Anti-human/anti-mouse: STAT3, p-STAT3, STAT4, p-STAT4, AKT, p-AKT, FOXO1, p-FOXO1, NFκB, p-NFκB, BLIMP1 and β-Tubulin from Cell Signaling Technology.
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3

Innate IEL Isolation and Characterization

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Cells were first incubated with anti-mouse CD16/CD32 Ab (clone 2.4 G2, BD Biosciences) for 10 min at 4° C, then washed and labeled with a cocktail of antibodies for 20 min at 4°C in dark (see Table 2). Cells were washed and treated with BD FACS Lysing Solution (BD Biosciences) for 5 minutes at RT. After washing, cells were analyzed on the LSR Fortessa X20 cytometer (Becton Dickinson).
For cell sorting, innate IELs were labeled with a cocktail of antibodies (CD45 FITC (Sony), CD103 PeCy7 (Biolegend) and NKp46 BV421 (Biolegend). Four populations (CD45+, CD45+NKp46-, CD45+CD103-NKp46-, and CD45+CD103+) were sorted using a BD FACSAria II SORP cell sorter (Becton Dickinson).
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4

Isolation of Lamina Propria Lymphocytes

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Isolation of lamina propria (LP) lymphocytes was performed according to adapted protocols of Weigmann et al. 13 (link) and Geem et al. 14 Briefly, the ileum and colon were harvested and opened longitudinally, washed to remove fecal content, and shaken in HBSS containing 5 mM EDTA and 5% FBS for 20 min at 37 °C twice. The epithelial cell suspension was discarded and the remaining intestinal sections were cut into small pieces and incubated in HBSS containing 5% FBS, 0.5 mg mL -1 collagenase VIII (Sigma-Aldrich, St Louis, MO), and 40 μg mL -1 DNase I (Roche Diagnostics, Basel, Switzerland) for 20 min at 37 °C followed by vortexing. The digested tissues were washed twice with HBSS. The collected cells were then resuspended in staining buffer containing PBS, 2% FBS and 0.1% NaN 3 and stained for surface CD4-PE-Cy7 (clone: RM4-5, Tonbo Bioscience, San Diego, CA) and CD25-FITC (7D4, BD Bioscience, San Jose, CA). Intracellular staining of Foxp3-PE (FJK-16s, eBioscience) was performed using a Foxp3 Staining Buffer Set (eBioscience) according to the manufacturer's protocol. Separately, LP lymphocytes were stained for surface CD11c-PE (N418, Tonbo Bioscience) and CD103-PE-Cy7 (2E7, Biolegend) for CD103 + DCs analysis. Samples were analyzed by flow cytometry using BD FACSVerse and BD FACSSuite software (BD Bioscience).
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