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Dc detergent compatible assay

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The DC (detergent compatible) assay is a colorimetric protein assay that can be used to determine the protein concentration of samples containing detergents. It is a modification of the Lowry assay, allowing for accurate protein quantification in the presence of common detergents found in cell lysis and solubilization buffers.

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5 protocols using dc detergent compatible assay

1

Cell Lysis and Protein Analysis

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Total cell lysates were obtained and separated by SDS-PAGE. Briefly, cells were solubilized with lysis buffer containing 50mM HEPES, 150mM NaCl, 10mM EDTA, 10mM Na4P2O7, 2mM sodium orthovanadate, 50mM NaF, 1mM phenylmethylsulfonyl fluoride, 10μg/ml aprotinin, 10μg/ml leupeptin, pH 7.4, and 1% (v/v) Triton X-100. Lysates were clarified by centrifugation at 12,000g for 20 minutes at 4°C. The protein concentrations in the cell lysates were measured using a Bio-Rad DC (detergent compatible) assay. Immunoprecipitation and Western blot analysis have been performed as previously described [37 (link)].
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2

Lysate Preparation and Western Blot

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Total cell lysates were obtained and separated by SDS-PAGE. Briefly, cells were solubilized for 20 min at 4 C with lysis buffer containing 50 mM HEPES, 150 mM NaCl, 10 mM EDTA, 10 mM Na4P2O7, 2 mM sodium orthovanadate, 50 mM NaF, 1 mM phenylmethylsulfonyl fluoride, 10 μg/ml aprotinin, 10 μg/ml leupeptin, pH 7.4, and 1% (v/v) Triton X-100. Lysates were clarified by centrifugation at 12,000g for 20 min at 4 C. The protein concentrations in the cell lysates were measured using a Bio-Rad DC (detergent compatible) assay. As already described [25 (link),30 (link)], the same amount (50/80 μg of protein/lane) of proteins were denatured by boiling in Laemmli sample buffer containing 10% 2-mercaptoethanol. Proteins were separated by SDS-polyacrylamide gel electrophoresis and blotted on Immobilon-P membranes (Millipore, Billerica, MA, USA). Membranes were blocked for 1 h in TBS tween (10 mM Tris-HCl, pH 7.4, and 140 mM NaCl) containing 3% (w/v) bovine serum albumin and then incubated with the indicated antibodies.
Detection of blotted proteins was performed by ECL according to the manufacturer's instruction. Densitometric analysis was performed using Image Lab software 3.0 (Bio-Rad, Hercules, CA, USA). To evaluate insulin response, cells were serum starved for 24 h in media containing 0.25% BSA, with or without 1 nM BPA and then stimulated with 100 nM of insulin for 10 min.
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3

Protein Extraction and Western Blot Analysis

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Total cell lysates were obtained and separated by SDS-PAGE. Briefly, tissue samples were homogenized in a Polytron (Brinkman Instruments, NY) in 10 ml T-PER reagent/g of tissue according to the manufacturer (Pierce, IL). After centrifugation at 10,000 rpm for 5 min, the supernatant was collected. Cells were solubilized with lysis buffer containing 50 mM HEPES, 150 mM NaCl, 10 mM EDTA, 10 mM Na 4 P 2 O 7 , 2 mM sodium orthovanadate, 50 mM NaF, 1 mM phenylmethylsulfonyl fluoride, 10 μg/ ml aprotinin, 10 μg/ml leupeptin, pH 7.4, and 1% (v/v) Triton X-100. Lysates were clarified by centrifugation at 14,000 rpm for 20 min at 4°C. Protein concentrations in the cell lysates were measured using a Bio-Rad DC (detergent compatible) assay. Western blot analysis has been performed as previously described. 29,30
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4

Bacterial Proteome Extraction and Digestion

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Bacteria cells
were lysed in lysis buffer (6 M urea (Millipore Sigma) in 50 mM Tris-HCl
buffer (pH = 8.0; Millipore Sigma), 4% (w/v) sodium dodecyl sulfate
(SDS; Millipore Sigma), and Roche PhosSTOP and Roche cOmplete Mini
tablets). The bacterial lysate was ultrasonicated for 10 min at 8
°C (Q125 Qsonica, USA) using a round of 10 s ultrasonication
and 10 s cooling down at 50% amplitude. The lysate was centrifuged
at 16,000g to remove the debris. Total protein was
precipitated by adding ice-cold acetone/ethanol/acetic acid (50:50:0.1;
Fisher Scientific) at a 1:5 (v/v) overnight at −20 °C.
Proteins were pelleted at 16,000g and 4 °C.
Protein pellets were washed with 100% acetone three times, and pellets
were dissolved in 6 M urea, 50 mM ammonium bicarbonate (pH 8.0; Millipore
Sigma). Protein concentration was measured by the detergent compatible
(DC) assay (Bio-Rad, USA). A 50 μg amount of protein was reduced
and alkylated with 10 mM dithiothreitol (37 °C for 1 h) and 20
mM iodoacetamide (room temperature in the dark for 45 min). After
10× dilution with 50 mM ammonium bicarbonate (pH 8.0), the protein
was digested by 1 μg of trypsin (Worthington biochemicals, USA)
per 50 μg of proteins at 37 °C for 24 h. Peptides were
desalted by a 10 μm C18 column (Dr.Maisch HPLC GmbH, Ammerbuch,
Germany). After freeze-drying, each sample was redissolved in 0.1%
(v/v) formic acid (Millipore Sigma).
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5

Transient Expression of ARSK and ARSG Variants

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ARSK-WT, ARSK-Arg84Cys, ARSK-Leu187Ter, ARSK-Cys80Ala and ARSG (N-sulfoglucosamine 3-O-sulfatase) were transiently expressed in HT1080 cells by polyethylenimine (PEI) transfection protocol. Cells were harvested 48 hours after transfection and lysed in phosphate-buffered saline (PBS)/0,5% TX100, sonication was performed on ice (3×10 s), and homogenates were obtained by centrifugation (15000 g, 4°C). Protein determination was performed by detergent compatible (DC) assay (BioRad). Homogenates (50 µg of total protein) were analysed by immunoblotting on polyvinylidene difluoride (PVDF) membrane and antibodies directed against ARSK (biorbyt 160024), ARSG (biorbyt 318995) and GAPDH (Santa Cruz sc-25778, FL-335) as loading control.
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