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8 protocols using fx630

1

On-chip Free-flow Phagocytosis Assay

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The schematic design and procedure of the on-chip free-flow method are shown in Figure 1B,C. First, 5.0×104 cells were placed in the 35 m m cell-culture dish (AGC TECHNO GLASS Co., Ltd., Shizuoka, Japan) with 2 m L DMEM and incubated for 3 h at 37 °C under 5% CO2 to allow them to adhere to the bottom of the dish. Then, 2.0×106 antigen beads were added to the dish carefully, and it was placed on the inverted microscope (IX71; 10× obj. lens; Olympus, Tokyo, Japan) stage with a slight tilt (see Figure 1C) to form 0.55   μ m/s of antigen flow before phagocytosis of the macrophages had begun. Since macrophages adhered to the bottom of the dish, tilting the cultivation dish generated a flow of antigen beads to the macrophages.
The observation was started as soon as the dish was set on the stage, and the concentration of antigen beads and the percentage of phagocytic cells in the observed area at each time were measured. During the experiment, the dish was placed in an appropriate environment for cell activity (37 °C, 5% CO2) by a stage-top incubator (Tokai Hit., Co, Ltd., Shizuoka, Japan). The microscope was equipped with a charge-coupled device camera (FX630, CCD camera; Olympus, Tokyo, Japan) to take micrographs at each time.
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2

Analyzing Sperm Nuclear Vacuoles

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The spermatozoa placed on a glass bottom dish were analyzed at 3,700× using an inverted microscope equipped with Nomarski differential interference contrast optics (IX71, Olympus, Tokyo) and a video system (FX630, Olympus, Tokyo). A 60-× (1.42 numerical aperture) objective lens was used with oil. Images of the spermatozoa were captured and stored on a video system using an image-filing software program, FlvFs (Flovel, Tokyo). We spent 30 to 60 minutes capturing and analyzing the images of each ejaculate. The spermatozoa were classified into three groups: (I) those bound to MH61-beads after the acrosome reaction at 24 hours of incubation regardless of the motility, (II) motile spermatozoa that did not bind to MH61-beads, and (III) immotile spermatozoa that did not bind to MH61-beads. At least 500 spermatozoa per ejaculate and 100 spermatozoa per each group were evaluated using the high-magnification microscope [14 (link)]. A nuclear vacuole was defined as “large” if the maximum diameter of the vacuole was more than 50% of the width of the sperm head [14 (link)]. Using this system, we evaluated large nuclear vacuoles (LNVs) not only in motile spermatozoa but also in immotile spermatozoa (Figure 1).
The percentage of spermatozoa with LNVs was calculated for each sample and compared between groups I, II, and III.
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3

Histological Analysis of Mouse Eyes Infected with Toxoplasma gondii

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At 28 dpi, the mice were exsanguinated while under deep anesthesia with pentobarbital, then perfused with phosphate-buffered saline solution. Their eyes and brain were isolated, fixed in 12% buffered formalin, embedded in paraffin, and stained with hematoxylin and eosin.49 (link) Images were acquired on a light microscope (BX41; Olympus, Tokyo, Japan) equipped with a charge-coupled device camera (FX630; Olympus).
For immunohistochemical analysis, eyes were embedded directly in O.C.T. compound (Tissue-Tek, Torrance, CA, USA) and flash frozen. Sections (5 µm thick) were cut on a cryostat (CM1510S; Leica, Nussloch, Germany), fixed in 75% acetone and 25% EtOH, and stained using a polyclonal rabbit anti-T. gondii antibody with an Alexa Fluor 488–conjugated goat anti-rabbit antibody (Molecular Probes; Invitrogen, Carlsbad, CA, USA) as a secondary antibody.19 (link) Rhodamine-labeled Dolichos biflorus agglutinin (Vector Laboratories, Burlingame, CA, USA) was used to visualize the cyst wall.19 (link) Cell nuclei were stained with DAPI (Invitrogen). Images were acquired on a fluorescence microscope (IX71, Olympus) equipped with a charge-coupled device camera (QImaging QIClick; Nippon Roper, Tokyo, Japan). The images were processed with imaging software (QCapture Pro 7.0, Nippon Roper).
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4

Sperm Nuclear Vacuole Analysis via MSOME

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The selected spermatozoa were analyzed at 3700x magnification using an inverted microscope equipped with Nomarski differential interference contrast optics (IX71, Olympus, Tokyo) and a video system (FX630, Olympus, Tokyo). A 60x (1.42 numerical aperture) objective lens was used with oil. The images of the spermatozoa were captured and stored using an image-filing software program, FlvFs (Flovel, Tokyo), on a video system. We spent 30 to 60 minutes capturing and analyzing the images of each ejaculate. Originally, 100 spermatozoa per ejaculate were evaluated using a motile sperm organelle morphology examination (MSOME) [28 (link), 29 (link)]; however, this was not always possible due to the poor semen quality in this cohort. A spermatozoon was defined as “vacuolated” if the maximum diameter of the sperm nuclear vacuole was more than one-third of the width of the sperm head (Figure 1). This definition is slightly modified from that used in our previous report [5 (link)].
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5

Perls' Blue Staining of Rice Cross-Sections

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Perls’ blue staining was performed with node I according to Yokosho et al. (2009) (link). Node I of both wild-type rice and osfrdl1 cultured in paddy fields was excised at the flowering stage. The cross-sections (100 μm) were sliced with LinearSlicer PRO10 (Dosaka EM). Sections were placed on microscope slides, and incubated with equal amounts of solutions of 4% (v/v) HCl and 4% (w/v) potassium ferrocyanide at room temperature for 1h. The signal was observed under an optical microscope (CKX41 with CCD camera FX630; Olympus).
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6

Histological Analysis of Implant Samples

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Samples from all groups were harvested 2 or 4 weeks after implantation. The specimens were fixed in 10% neutral formalin, and then decalcified with 10% EDTA (pH 7.4). After 4 weeks of decalcification, samples were embedded in paraffin and sectioned at 4 μm thickness in the coronal plane using a microtome (REM-710, YAMATO KOHKI Industrial Co., Ltd., Saitama, Japan). Sections were dewaxed, rehydrated, stained with hematoxylin-eosin, and analyzed using a light microscope (FX630, OLYMPUS Co., Tokyo, Japan) and FLVFS-LS software (OLYMPUS Co.).
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7

Microscopic Imaging of Live Cells

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Differential interference contrast and bright-field images were generated with an inverted microscope (IX71, Olympus, Tokyo, Japan) equipped with a color charge-coupled device camera (FX630, Olympus) and the Flovel Image Filing System (Flovel, Chofu, Japan). Fluorescent images and the associated monochromatic bright-field images were generated with an inverted microscope (IX73, Olympus) equipped with a complementary metal oxide semiconductor camera (ORCA-Flash 4.0, Hamamatsu Photonics, Hamamatsu, Japan) and cellSens Dimension v 1.18 software (Olympus). In general, the sampled cells were held between two glass coverslips (0.13 to 0.17 mm) for observation. To stain the nuclei of live cells, SYBR Green I (Lonza, Basel, Switzerland) was applied to the cultured cells before observations.
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8

Immunofluorescent Staining of Cells

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Experimental procedures for cell staining were described previously [56 (link)]. In brief, cells were fixed with 3.7% paraformaldehyde in phosphate-buffered saline (PBS) and permeabilized with 0.1% Triton X-100. After blocking with 1% donkey serum albumin (DSA) in PBS, primary antibodies were incubated at 4 °C overnight, and the cells were incubated with a Rhodamine Red-X- or Fluorescein (FITC)-conjugated secondary antibody (Jackson ImmunoResearch, West Grove, PA, USA) at 1:1500 dilution at room temperature for 45 min. Hoechst 33258 (Thermo Fisher Scientific) was used at 1:3000 dilution for 2 min. Confocal microscopy used a Zeiss LSM 510 (Oberkochen, Deutschland) to obtain phase contrast images. For some staining, methanol at −20 °C was used for 10 min as the fixative. An Olympus BX53 microscope, a charge-coupled device (CCD) camera, FX630 (Olympus, Shinjuku, Japan) was used to analyze immunofluorescent staining of transfected cortical neurons.
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