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4 protocols using cb 839

1

Reagents for Macrophage Metabolism Analysis

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RPMI-1640 with Glutamax, non-essential amino acids (NEAA), sodium pyruvate, and penicillin–streptomycin (P/S) were from Gibco (Paisley, Scotland, UK). Fetal bovine serum (FBS) was purchased from Life Science Production (Barnet, UK). Cytokines M-CSF, IL-4, and IFN-γ were purchased from Biolegend (San Diego, CA, USA). 2-Deoxy-D-glucose (2-DG), Oligomycin (Oligo), Carbonyl cyanide-4-(trifluoromethoxy) phenylhydrazone (FCCP), Rotenone (R/Rot,), and Antimycin A (AA) were purchased from Abcam (Cambridge, UK). Perhexiline (PerHx) and H531 (Hx) were purchased from Tocris (Bristol, UK). CB-839 was purchased from FOCUS Biomolecules (Plymouth Meeting, PA, USA). Trimetazidine (TMZ) was purchased from Sigma-Aldrich (St. Louis, MO, USA). VLX-600 (VLX) was purchased from Cayman Chemical (Ann Arbor, MI, USA). Lipopolysaccharide (LPS) from E. Coli was obtained from Sigma-Aldrich. Any other material used was of analytical grade.
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2

Metabolic Modulation in Cancer Research

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The following drugs were used: 6‐Diazo‐5‐oxo‐l‐norleucine (Don, D2141, Sigma‐Aldrich); Sodium dichloroacetate (DCA, 347795, Sigma‐Aldrich); NCT‐502 and PHGDH inactive (19716 and 19717, Cayman); Doxycycline (Dox, D9891, Sigma‐Aldrich), Oligomycin (sc‐203342, Santa Cruz Biotechnology); FCCP (sc‐203578, Santa Cruz Biotechnology); Antimycin (sc‐202467, Santa Cruz Biotechnology); Rotenone (sc‐203242, Santa Cruz Biotechnology); Cyt.C (C2037, Sigma‐Aldrich) CB‐839 (10‐4556, Focus Biomolecules); Adenosine diphosphate (ADP, A2754, Sigma‐Aldrich).
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3

Metabolic Profiling of Cell Treatments

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We used the following specific chemical compounds for cell treatment: (aminooxy)acetic acid hemihydrochloride (Sigma-Aldrich C13408), CB-839 (Focus Biomolecules 10-4556), BPTES (Sigma-Aldrich, SML0601), dmOG (Sigma-Aldrich, 349631), methyl pyruvate (Sigma-Aldrich, 371173), 17-β-estradiol (Sigma-Aldrich, E2758), octyl-R-2HG (Sigma-Aldrich, SML2200). Antibodies used in the study were following: Gls1 (Abcam ab156876), PHGDH (Abcam ab57030), anti-FLAG (M2, Sigma-Aldrich F1804), IDH2 (Abnova H00003418-M01), ATP5A (Abcam ab14748), Tim23 (Abcam ab176558), PDH (Abcam ab92696), and β-actin (Abcam ab8226).
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4

Cytotoxicity Assay for Cell Viability

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Compounds were added 24 hours after cell plating and viability was assessed at the specified time point using the CellTiter-Glo luminescent cell viability assay (Promega) according to the manufacturer’s instructions. Data were normalized to vehicle-treated controls and IC50 curves were generated using Graphpad Prism. Viability assays were generally performed at least twice. In assays that included N-acetylcysteine (Sigma-Aldrich) treatment, the medium was replaced every 48 hours except in RNAi experiments where additional N-acetylcysteine was added every 48 hours. CB-839 was obtained from Focus Biomolecules (14 (link)). Erastin was purchased from Cayman Chemical (15 (link)), and BPTES was acquired from Sigma (16 (link)).
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