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846 protocols using axopatch 200b amplifier

1

Whole-cell and Single-channel Recording of KCNQ1 Channels

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Whole-cell experiments were carried out using tsA201 cells for the greatest expression, while cell-attached experiments utilized mouse ltk- fibroblasts for their lower levels of endogenous K+ currents. As previously described12 cells were plated on coverslips and transfected the next day with Lipofectamine as per the manufacturer’s protocol with 2 µg of GFP-tagged WT or mutant KCNQ1 in pcDNA3. Recordings were made 24–48 h after transfection.
Whole-cell currents were recorded using an Axopatch 200B amplifier, Digidata 1440A, and pClamp 10 software (Clampex10.1, Molecular Devices, San Jose, CA, USA). Electrode resistances were between 1–2 MΩ, with series resistances <4 MΩ. and compensation of ~80% was applied with a calculated voltage error of ~1 mV/nA current. Currents were sampled at 10 kHz and filtered at 2–5 kHz12 . Single-channel recordings were acquired with an Axopatch 200B amplifier, Digidata 1330 A and pClamp 9 software (Molecular Devices, San Jose, CA, USA). After fire polishing, single-channel electrode resistances were between 40 and 60 MΩ. Prior to use, electrodes were coated with Sylgard (Dow Corning, Midland, MI, USA). Records were sampled at 10 kHz, low-pass filtered at 2 kHz at acquisition using a −3 dB, four-pole Bessel filter, and digitally filtered at 200 Hz for presentation and analysis using Clampfit 10.112 ,90 (link),91 (link).
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2

VDAC Channel Reconstitution and Modulation

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Planar bilayer membranes were formed from diphytanoyl-phosphatidylcholine (DPhPC) (Avanti Polar Lipids, Alabaster, AL) from two opposing lipid monolayers of across ~70 μm aperture in the 15-μm-thick Teflon partition separating two ~1.2-mL compartments as previously described.48 Channel currents were recorded as described previously49 (link), 50 (link) using an Axopatch 200B amplifier (Axon Instruments, Inc., Foster City, CA) in the voltage clamp mode. Data were filtered by a low pass 8-pole Butterworth filter (Model 900, Frequency Devices, Inc., Haverhill, MA) at 15 kHz and a low pass Bessel filter at 10 kHz, and directly saved into computer memory with a sampling frequency of 50 kHz. VDAC insertion was achieved by adding purified VDAC in a 2.5% Triton X-100 solution to the aqueous phase of 1 M (M = mol/L) KCl buffered with 5 mM Hepes at pH 7.4 in the cis compartment while stirring. Potential is defined as positive when it is greater at the side of VDAC addition (cis). αSyn constructs at final concentration of 50 nM were added symmetrically to the membrane-bathing solutions to both sides of the membrane after VDAC channel reconstitution; statistical analysis of the blockage events began 15 min after αSyn addition to ensure a steady state.
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3

Whole-Cell Patch-Clamp for Acid-Induced ASIC Currents

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We used whole-cell patch-clamp mode to record acid-induced ASIC currents at room temperature with an Axopatch 200B amplifier (Axon Instruments, FosterCity, CA). The currents were acquired using p-CLAMP software (version 10; Axon Instruments) at a rate of 10 kHz and data analysis was performed using Clamp fit software (version 10.0; Axon Instruments) (23 (link), 49 (link)).
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4

Patch-Clamp Analysis of SON Neurons

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ATP-induced currents and membrane potentials were recorded from SON slices using standard whole-cell patch clamp techniques with an Axopatch-200B amplifier (Axon Instruments, Union City, CA, United States). Patch pipettes were pulled on the horizontal Flaming Brown P-97 model puller (Sutter Instruments, Novato, CA, United States) from borosilicate glass (World Precision Instruments, Sarasota, FL) and polished by heat to a tip resistance of 4–6 MΩ. The access resistance (average 14.2 ± 1.2 MΩ, n = 18) was monitored throughout each experiment. The mean capacitance of the cells was 6–8 pF, 50–80% series resistance compensation was used, and liquid junction potential (∼4 mV), calculated using the program CLAMPEX 9, was corrected offline when determining the resting membrane potential of SON cells. Data were captured and stored using the pClamp 9 software package in conjunction with the Digidata 1322A A/D converter (Axon Instruments). Signals were filtered at 1 kHz and sampled at 10 kHz. The ATP-induced currents and spontaneous miniature postsynaptic currents (mPSCs) were recorded from cells voltage-clamped in the presence of 0.5 μM tetrodotoxin (TTX) that was used to block action potentials. The cell membrane potential was held at –60 mV.
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5

Whole-cell Patch-clamp Recordings of Voltage-dependent Ion Currents

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Whole-cell patch-clamp recordings were performed in −60 mV clamped-cells by using the following solutions: extracellular (mM): HEPES 10, D-glucose 5, NaCl 140, KCl 3, MgCl2 2, and CaCl2 2 (pH 7.4). Pipette (mM): K-Aspartate 130, MgCl2 2, Na2-ATP 5, Na2-GTP 0.1, EGTA 11, HEPES 10 (pH 7.2). Data were acquired with an Axopatch 200B amplifier (Axon Instruments, Union City, CA, USA), low-pass filtered at 10 kHz, stored and analyzed with a pClamp 9.2 software (Axon Instruments). Detailed protocols used to evoke voltage-dependent K+ or Na+ currents are described in Supplementary Material. Drugs used were applied by superfusion with a three-way perfusion valve controller (Harvard Apparatus). Current-clamp recordings were performed by applying 12 steps of current injection (300 ms duration; 100 pA increment, from −100 pA to 1000 pA) from the resting membrane potential of the investigated cell, as already described (Coppi et al., 2012 (link)) and detailed in Supplementary Material.
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6

Whole-Cell Patch-Clamp Recording of CA1 Pyramidal Cells

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CA1 hippocampal pyramidal cells were visualized using a Leica differential interference contrast (DIC)-infrared upright microscope. Whole-cell patch-clamp recordings were carried out in voltage-clamp mode at a holding potential of −50 or −60 mV at room temperature (Axopatch 200B amplifier, Axon Instruments, 20 kHz sampling frequency, 2 kHz 4-pole Bessel filter) and pClamp 9.2 software. Patch pipets were fabricated to yield open tip resistances of 2–4 MΩ. Electrode capacitance and series resistance were monitored and compensated; access resistance was monitored throughout the experiment, and cells discarded if the access resistance >10 MΩ. Five millimolar QX-314 was added to the pipet solution to block voltage-gated Na+ channels and GABAB receptor-activated K+ channels (Nathan et al., 1990 (link); Otis et al., 1993 (link)). The bath contained 2 mM kynurenic acid and 1 μM strychnine to pharmacologically isolate the GABAergic current.
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7

Whole-Cell Electrophysiological Recording

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All recordings were performed at room temperature (21-23°C) in whole-cell configuration using the Axopatch 200B amplifier (Axon instruments), digitized at 50 kHz (Digitizer 1322A; Axon instruments), low-pass filtered at 5 kHz, and compensated for 60% to 90% of the series resistance. Specific details are provided in Methods in the online-only Data Supplement.
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8

Patch Clamp Recording of Retinal Cells

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Patch pipettes were pulled from borosilicate capillaries (Harvard Apparatus Ltd., UK) with a Brown Flaming Puller (P-87, Sutter Instrument Co., Novato, CA) and had impedances between 5 and 15 M when filled with pipette solution and measured in Ringer's solution. Series resistances ranged from 6 to 33 M and were corrected for junction potential and series resistance offline (see Data Analysis section). Electrodes were placed in a PCS-5000 micromanipulator (Burleigh Instruments, Inc., Fishers, NY) and connected to an Axopatch 200B Amplifier (Axon Instruments, Inc., Union City, CA).
A second PCS-5000 micromanipulator was used to hold the puffer pipettes (manufactured as described above) and perfuse drugs locally by means of computer-controlled air ON mBCs were visually selected based on their characteristic morphology and position in the outer part of the inner nuclear layer. Cell type was confirmed by measurement of response properties. Lucifer yellow was routinely included in the pipette solutions and dye-filled cells were observed immediately after the experiment. Data from both intact and axotomized cells were used. Unless otherwise stated, recordings from at least three cells yielded similar results for the experiments described.
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9

Patch Clamp at Room Temperature

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Patch clamp experiments were performed at room temperature (22–24°C). Voltage clamp was achieved with an Axopatch 200B amplifier (Axon Instruments) run by Patchmaster software (HEKA).
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10

Whole-Cell Voltage-Clamp Recordings

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Whole-cell voltage-clamp recordings used an Axopatch 200B amplifier which was controlled by a DigiData 1440A interface and pClamp 10.0 software (Axon Instruments, Foster City, CA). The micropipettes were drawn out by Sutter patch electrode pullers. The tip resistance of micropipette was 6–8 MΩ when filled with internal solution. The internal solution contained 10 mM CsCl, 5 mM EGTA, 118 mM Cs methanesulfonate, 0.5 mM CaCl2, 0.8 mM Lucifer yellow, 10 mM Tris, 4 mM ATP, 0.3 mM GTP, and was titrated with CsOH to pH 7.4. All chemicals were purchased from Research Biochemical International (Natick, MA) or Sigma (St Louis, MO).
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