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512 protocols using propidium iodide

1

Cell Cycle and Apoptosis Analysis

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Cells seeded on six-well plates were harvested 72 h post transfection by trypsin and collected by centrifugation. Cell pellets were washed with cold PBS, and then fixed in 70% ethanol at 4°C overnight. After fixation, the cells were washed and resuspended in PBS, and then incubated with ribonuclease at 37°C for 30 minutes, next stained with propidium iodide (Beyotime, China) in the dark at 4°C for 30 minutes, and finally analyzed by a flow cytometer FACSCalibur (BD Bioscience, USA) and Modlfit software (Verity Software House, USA).
For apoptosis analysis, the trypsinized and PBS washed cells were stained with FITC-Annexin V and propidium iodide (Beyotime, China). Cells were analyzed by FACSCalibur and Flowjo software (BD Bioscience, USA). Cells were discriminated into viable cells, dead cells, early apoptotic and late apoptotic cells, relative ratios of the early and late apoptotic cells were compared to the control group.
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Apoptosis and Cell Cycle Analysis

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To analyze cell apoptosis and cell cycle, the KYSE150 and KYSE450 cells were harvested after transfection with siRNA duplexes for 72 h. For cell apoptosis analysis, collected cells were incubated with Annexin V-FITC and propidium iodide (Beyotime, shanghai, China) for 15 min and then detected with flow cytometry (Beckman, USA). For cell cycle analysis, we fixed the collected cells using 70% ethanol overnight at 4 °C. After that, the samples were incubated with propidium iodide (Beyotime, Shanghai, China) at 37 °C for 30 min in the dark. Next, the cells were tested within 2 h by flow cytometry (Beckman, USA).
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3

Cell Cycle and Apoptosis Analysis

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Cell cycle and apoptosis were detected as previously described [22 (link)]. Organoids were cultured and treated with the indicated drugs at different concentrations for 48 h, followed by single staining with propidium iodide (Beyotime Biotechnology Co., Ltd., China) for cell cycle analyses and double staining with propidium iodide and Annexin V-FITC (Beyotime Biotechnology Co., Ltd., China) for apoptosis analyses.
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4

Cell Cycle and Apoptosis Profiling

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Cell cycle process and cell apoptosis were determined using this assay. A2780 and SKOV3 cells were harvested and washed with cold phosphate buffer saline (PBS, Beyotime). The cell suspensions were fixed with 70% ethanol (Jianxing, Guangzhou, China), incubated with RNase A and propidium iodide (all from Beyotime) to analyze cell cycle process using flow cytometer. Additionally, the cell suspensions were suspended with Annexin V-FITC binding buffer (Beyotime) and then stained with Annexin V-FITC (Beyotime) and propidium iodide to analyze cell apoptosis rate using flow cytometer.
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5

Cell Apoptosis and Cell Cycle Analysis

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The CRC cells were incubated in 6-well plates with RC48 and/or GEM for 48 h. For cell apoptosis analysis, cell death was detected by using an Annexin V-FITC apoptosis kit (Beyotime Biotechnology, Shanghai, China). For cell cycle analysis, the cells were stained with propidium iodide (Beyotime Biotechnology, Shanghai, China), and total DNA content was detected with propidium iodide. Then cell cycle and apoptosis were measured by a Flow cytometer (BD, FACSCantoII, USA).
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6

Cell Apoptosis and Cycle Analysis

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After transfection with siRNA duplexes for 24 h, the cells were exposed to 4 Gy of irradiation for cell apoptosis analysis and 8 Gy for cell cycle analysis. Twenty-four hours after irradiation, the cells were harvested. For cell apoptosis assay, Annexin V-FITC and propidium iodide (Beyotime, shanghai, China) were used to identify the apoptotic cells. Then, the treated cells were analyzed by flow cytometry (Beckman, USA). As for cell cycle analysis, before the cells were tested, the harvested cells were fixed and incubated with propidium iodide (Beyotime, shanghai, China) for staining the cells nuclei. FlowJo software (Tree Star, Ashland, OR, USA) and Modfit LT (Verity Software House, Topsham, ME, USA) were used for cell apoptosis and cycle analysis, respectively.
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7

Gelatin-Based Hydrogel for Stem Cell Culture

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Gelatin (type A, from porcine skin), methacrylic anhydride (MA), and sodium periodate (NaIO4) were obtained from Aladdin Industrial Corporation (Shanghai, China). Dextran (Mw = 70 kDa) was purchased from J&K Scientific co., Ltd (Beijing, China). Lysozyme was purchased from commercially Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Human umbilical cord mesenchymal stem cells (UCMSCs, AC340316) was purchased from American Type Culture Collection (Manassas, VA). Live/Dead cell staining kits, Cell Counting Kit-8 (CCK-8), Calcein-AM, propidium iodide, 4,6-diamidino-2-phenylindole (DAPI) and TRITC Phalloidin were purchased from Biyuntian Biotechnology CO. LTD. (Shanghai, China). All of the chemical reagents were of analytical grade and used without any further purification.
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8

Annexin V-FITC Apoptosis Analysis

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AGS and HGC-27 cells were transfected as described in section “Cell Transfection” and cultured for another 24 h to perform the apoptosis analysis. The cells were harvested and washed with ice-cold PBS for twice, and then the cell concentration was adjusted to 1 × 106 cells/ml. Next, cells were stained with 5 μl Annexin V-FITC (Biyuntian, Shanghai, China) for 10 min. And, the cells were centrifuged at 1,000 × g for 5 min to remove the supernatant, and then suspended in binding buffer. Finally, the cells were stained with 10 μl propidium iodide (Biyuntian, Shanghai, China) for 5 min in the dark and analyzed by flow cytometry (BD Biosciences) to evaluate the rate of apoptosis.
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9

Annexin V and PI Staining for Apoptosis

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Following the applied treatment, retinal cells were harvested, washed and resuspended in binding buffer with 1 μL of Annexin V-FITC and 1 μL of propidium iodide (PI) (Biyuntian, Wuxi, China). After incubation for 20 min at room temperature, cells were then tested by flow cytometry via CellQuest software (BD Biosciences, Shanghai, China). Annexin V ratio was recorded [8 (link), 39 (link)].
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10

Synthesis and Characterization of HA-PEI Nanoparticles

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All reagents were of analytical grade and obtained from several different vendors. FeCl3, NH4SO4, NH4HPO4, polyethylenimine (PEI, molecular weight = 25,000 Da), N-hydroxysuccinimide, and dialysis bag (3,500 Da) were purchased from Aladdin Biochemical Technology Co., Ltd (Shanghai, China), China. The hyaluronic acid (HA, molecular weight = 5,000–10,000 Da) was purchased from Zhanxun Biotechnology Co., Ltd (Xi’an, China). Dimethyl sulfoxide (DMSO) and absolute ethyl alcohol were purchased from Luoyang Chemical Regent Factory (Luoyang, China). 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazoliun bromide (MTT), doxorubicin hydrochloride (DOX), and dulbecco minimum essential medium (DMEM) medium was purchased from Yuanye Bio-Technology Co., Ltd (Shanghai, China). The calcein acetoxymethyl ester (Calcein-AM) and Propidium Iodide (PI) were obtained from Biyuntian Biotechnology (Shanghai, China). The 4T1 cell line was purchased from the Cell Bank of the Chinese Academy of Sciences. Milli-Q water (18.2 MΩ·cm) was used in all experiments.
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