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10 protocols using αcd16 32

1

Flow Cytometric Analysis of Th1/Th17 Cells

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For identification of IL17- and IFNγ-producing cells, lymphocytes were activated with 100 ng/ml phorbol myristate acetate (PMA) (Sigma-Aldrich), 1 µg/ml ionomycin, and 0.7 µl/ml Golgistop (BD Biosciences, San Jose, CA) in R-10P media (RPMI 1640 (Mediatech, Manassas, VA), 10% Fetal Calf Serum (Thermo Scientific, Rockford, IL), 1% penicillin/streptomycin, 0.1% β-mercaptoethanol, and 1% Glutamax (Fisher, Pittsburg, PA) for 5 hr at 37C. Staining was performed as previously described (Tanner et al. 2012 (link)). Briefly, the FcR were blocked via αCD16/32 (Biolegend, San Diego, CA) and CD4-APC was used as a cell-surface marker for Th1/Th17 lymphocytes. Permeabilization of cells allowed for the intracellular staining of IL-17-PE, IFNγ-FITC (Th17/Th1) and Foxp3-APC before fixation and FACS analysis on both Tregs and Teff cells (Biolegend). Cell-surface antibodies listed as CD4-FITC and CD25-PE were used as Treg markers.
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2

Dissociation and Analysis of Tracheal Cells

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Trachea was collected from the larynx to the tracheal bifurcation, mechanically disrupted with scissors and digested for 45 min at 37°C in an enzyme mix composed of: DNase I (0.28 mg/ml, Amresco), and 0.26 units / ml of Liberase TL Research Grade (Roche) in RPMI 1640 Medium (Gibco) followed by a stop solution of 2 mM EDTA (Sigma Aldrich) and 2 % heat-inactivated filter-sterilised Fetal Calf Serum (Thermo Fisher Scientific) in PBS (Sigma Aldrich). Single cell populations were obtained by forcing the remaining tissue pieces through a 40-µm strainer followed by lysis of red blood cells. Fc receptors from the isolated cells were blocked (αCD16/32, Biolegend) followed by surface staining and analysis by flow cytometry on a LSRFortessa™ (BD Biosciences). Where indicated, intracellular staining was performed according to eBioscience™. Intracellular Fixation & Permeabilization Buffer Set (eBioscience) following the manufacturer’s instructions. Dead cells were excluded using ZombieAcqua fixable viability dye (Biolegend) and data were analysed using FlowJo software (TriStar Inc).
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3

Flow Cytometry Analysis of Neutrophil Influx

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Neutrophil influx to the PLN was monitored using flow cytometry. PLN were collected, disrupted with tweezers, and digested for 10 min at 37°C in an enzyme mix composed of DNase I (0.28 mg/ml, Amresco), dispase (1 U/mL, Corning), and collagenase P (0.5 mg/mL, Roche) in calcium- and magnesium-free PBS (PBS-) followed by a stop solution composed of 2 mM EDTA (Sigma-Aldrich) and 2% heat-inactivated filter-sterilized fetal calf serum (Thermo Fisher Scientific) in PBS- (Sigma-Aldrich). Fc receptors were blocked (αCD16/32, Biolegend) followed by surface staining and analyzed by flow cytometry on a LSRFortessaTM (BD Biosciences). Dead cells were excluded using ZombieAcqua fixable viability dye (Biolegend) and data were analyzed using FlowJo software (TriStar Inc).
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4

Flow Cytometry Analysis of Immune Cells

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Flow cytometry analysis was conducted accordingly to the recently published guidelines 45. Organs were mechanically disrupted with scissors and digested for 45 min at 37°C in an enzyme mix composed of: DNase I (0.28 mg/mL, Amresco, Fountain Parkway Solon, OH), and 0.26 units/mL of Liberase TL Research Grade (Roche, Basel, Switzerland)) in RPMI 1640 Medium (Gibco, Bleiswijk, Netherlands) followed by a stop solution of 2 mM EDTA (Sigma–Aldrich, San Luis, MO) and 2% heat‐inactivated filter‐sterilized FCS (Thermo Fisher Scientific, Waltham, MA) in PBS (Sigma–Aldrich, San Luis, MO). Single cell populations were obtained by forcing the remaining tissue pieces through a 40‐µm strainer followed by lysis of RBCs. Fc receptors from the isolated cells were blocked (αCD16/32, Biolegend, San Diego, CA) followed by surface staining and analysis by flow cytometry on a LSRFortessaTM (BD Biosciences, Franklin Lakes, NJ). Where indicated, intracellular staining was performed according to eBioscience™ Intracellular Fixation & Permeabilization Buffer Set (eBioscience, Santa Clara, CA) following the manufacturer's instructions. Dead cells were excluded using ZombieAcqua fixable viability dye (Biolegend, San Diego, CA) and data were analyzed using FlowJo software (TriStar Inc, Phoenix, AZ). For detection of Vγ6+ cells, samples were pre‐stained with GL3 followed by 17D1.
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5

Purification and Characterization of CD11b+ Cells

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PECs were collected and washed once. For latency experiments, cells were counted and CD11b+ cells were selected by MACS column purification using the CD11b MicroBead kit and LS columns (Miltenyi Biotec). Total PECs were used for MHV68 acute infection experiments. CD11b+ cells or whole PECs were Fc blocked with α-CD16/32 (Biolegend) and stained with Alexafluor 647-α-CD102 (3C4 (MIC2/4), Biolegend), APC-Cy7-α-CD19 (1D3, BD Biosciences), redFluor 710-α-CD11b (M1/70, Tonbo) or APC-Cy7-α-CD11b (M1/70, Biolegend), and R718-α-CD102 (3C4 (MIC2/4), BD Biosciences). Cells were counted again and resuspended in 3 x 106 cells/mL before adding CC4F-AM (LiveBLAzer FRET-B/G Loading Kit with CCF4-AM, ThermoFisher Scientific). Cells were incubated for 1 hour, then washed with PBS and fixed with 2% formaldehyde. Samples were immediately run on a Novocyte 3000 (ACEA Biosciences).
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6

Isolation and Immunophenotyping of Peritoneal Exudate Cells

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Peritoneal exudate cells (PECs) were collected by lavage with 10 mL of flow buffer (1% FBS in PBS (Corning)). PECs were washed once, then Fc receptors were blocked with α-CD16/32 (Biolegend). The following antibodies were used in various experiments: Alexafluor 647-α-CD102 (3C4 (MIC2/4), Biolegend), APC-Cy7-α-CD19 (1D3, BD Biosciences), redFluor 710-α-CD11b (M1/70, Tonbo), Fitc-α-CD11b (M1/70, BD Biosciences), PE-Cy7-α-CD19 (1D3, Tonbo), Violetfluor450-α-CD3 (17A2, Tonbo), and BV711-α-Siglec F (E50-2440, BD Biosciences). Cells were fixed with 2% formaldehyde (VWR). Samples were run on a Novoctye 3000 (ACEA Biosciences) and analyzed with either Flowjo (Tree Star, Inc, San Carols, CA) or NovoExpress (version 1.5.0, Agilent Technologies, Inc.).
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7

Isolation and Immunophenotyping of Peritoneal Exudate Cells

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Peritoneal exudate cells (PECs) were collected by lavage with 10 mL of flow buffer (1% FBS in PBS (Corning)). PECs were washed once, then Fc receptors were blocked with α-CD16/32 (Biolegend). The following antibodies were used in various experiments: Alexafluor 647-α-CD102 (3C4 (MIC2/4), Biolegend), APC-Cy7-α-CD19 (1D3, BD Biosciences), redFluor 710-α-CD11b (M1/70, Tonbo), Fitc-α-CD11b (M1/70, BD Biosciences), PE-Cy7-α-CD19 (1D3, Tonbo), Violetfluor450-α-CD3 (17A2, Tonbo), and BV711-α-Siglec F (E50-2440, BD Biosciences). Cells were fixed with 2% formaldehyde (VWR). Samples were run on a Novoctye 3000 (ACEA Biosciences) and analyzed with either Flowjo (Tree Star, Inc, San Carols, CA) or NovoExpress (version 1.5.0, Agilent Technologies, Inc.).
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8

Tumor Immune Cell Profiling Protocol

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Minced tumors were digested with the dissociation buffer containing 1 mg/ml Collagenase B (11,088,807,001, Roche), 0.5 mg/ml DNase I (abs47047435, Absin), and 0.5 mg/ml Hyaluronidase (H3884, Sigma-Aldrich) at 37 °C for 40 min. Then, the suspension was filtered, and the centrifuged cells were treated with red blood cell lysis buffer (C3702, Beyotime). Subsequently, the cells were labeled with Fixable Viability Stain 780 (565,388, BD) and blocked with α-CD16/32 (101,339, BioLegend). Staining reagents used in flow cytometry included Abs targeting CD45 (560,510, BD), CD3e (562,600, BD), CD8α (563,068, BD), CD49b (740,363, BD), CD44 (561,859, BD), CD62L (553,152, BD), CD69 (566,500, BD), CD25 (553,075, BD), Ki67 (556,027, BD), Perforin (11-9392-82, ThermoFisher), Granzyme-B (372,204, BioLegend), TNF-α (563,943, BD), IFN-γ (560,660, BD), CD11c (566,504, BD), CD80 (560,016, BD), CD86 (561,962, BD), CD11b(101,206, BioLegend), F4/80 (565,411, BD), CD206 (141,708, BioLegend), I-A/I-E (107,608, BioLegend). Auxiliary reagents used in flow cytometry included Brilliant Stain Buffer (563,794, BD), GolgiPlug (555,029, BD), and FOXP3 Fix/Perm Buffer Set (421,403, BioLegend). Cell number per 100 mg tumor tissue was measured by Vi-Cell Auto (Beckman). All flow cytometry assays were conducted by FACSCelesta (BD) and analyzed by FlowJo (BD).
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9

Dissociation and Analysis of Tracheal Cells

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Trachea was collected from the larynx to the tracheal bifurcation, mechanically disrupted with scissors and digested for 45 min at 37°C in an enzyme mix composed of: DNase I (0.28 mg/ml, Amresco), and 0.26 units / ml of Liberase TL Research Grade (Roche) in RPMI 1640 Medium (Gibco) followed by a stop solution of 2 mM EDTA (Sigma Aldrich) and 2 % heat-inactivated filter-sterilised Fetal Calf Serum (Thermo Fisher Scientific) in PBS (Sigma Aldrich). Single cell populations were obtained by forcing the remaining tissue pieces through a 40-µm strainer followed by lysis of red blood cells. Fc receptors from the isolated cells were blocked (αCD16/32, Biolegend) followed by surface staining and analysis by flow cytometry on a LSRFortessa™ (BD Biosciences). Where indicated, intracellular staining was performed according to eBioscience™. Intracellular Fixation & Permeabilization Buffer Set (eBioscience) following the manufacturer’s instructions. Dead cells were excluded using ZombieAcqua fixable viability dye (Biolegend) and data were analysed using FlowJo software (TriStar Inc).
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10

Purification and Characterization of CD11b+ Cells

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PECs were collected and washed once. For latency experiments, cells were counted and CD11b+ cells were selected by MACS column purification using the CD11b MicroBead kit and LS columns (Miltenyi Biotec). Total PECs were used for MHV68 acute infection experiments. CD11b+ cells or whole PECs were Fc blocked with α-CD16/32 (Biolegend) and stained with Alexafluor 647-α-CD102 (3C4 (MIC2/4), Biolegend), APC-Cy7-α-CD19 (1D3, BD Biosciences), redFluor 710-α-CD11b (M1/70, Tonbo) or APC-Cy7-α-CD11b (M1/70, Biolegend), and R718-α-CD102 (3C4 (MIC2/4), BD Biosciences). Cells were counted again and resuspended in 3 x 106 cells/mL before adding CC4F-AM (LiveBLAzer FRET-B/G Loading Kit with CCF4-AM, ThermoFisher Scientific). Cells were incubated for 1 hour, then washed with PBS and fixed with 2% formaldehyde. Samples were immediately run on a Novocyte 3000 (ACEA Biosciences).
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