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Agilent 6890n network gc system

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6890N Network GC System is a gas chromatography system designed for laboratory use. It features a modular and networkable design, allowing for integration into various laboratory environments. The system is capable of performing gas chromatographic analysis and separation of complex chemical mixtures.

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18 protocols using agilent 6890n network gc system

1

GC-MS Quantification of Urinary Allantoin

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Allantoin was measured in the urine by the adaptation of the method developed by Gruber [15 (link), 13 ]. In summary, 25 µL of urine was spiked with 400 µL of 10 µM internal standard (DL-allantoin- 5-13C;1-15N). The spiked samples were simultaneously deproteinized and extracted with 100 µL acetonitrile, vortexed and centrifuged at 20 000 g, 4oC, for 5 minutes. The supernatant was dried using the speed vacuum drier and derivatized with 50 µL of MTBSTFA (i.e. N-methyl-N-tert-butyl-dimethyl-silyltrifluoroacetamide) in pyridine (1:1 vol/vol). The derivatization process was facilitated by incubation at 50oC for 2 hours. Analysis was performed on Agilent 6890N Network GC System connected to an Agilent 5973 Inert Mass Selective Detector (both Agilent Technologies, Inc, Santa Clara, California). Separation was performed using an Agilent 122-5532G capillary column (25.7 m length, 0.25 mm internal diameter). Allantoin was quantified using selected ion monitoring mode with the 398.00 m/z ion being monitored for allantoin and the 400.00 m/z for DL-allantoin- 5-13C;1-15N. The ion abundance ratios (398.00/ 400.00) were converted to micromolar concentrations by use of a standard curve.
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2

GC-MS Analysis of Hexane Fraction

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The ground resin (4.0 g) was extracted by maceration in MeOH (3 × 100 mL) at room temperature for 24 hours. After filtration, the organic solutions were concentrated at 40°C to give a crude MeOH extract that was diluted with H2O (50 mL) and sequentially partitioned with n-hexane (3 × 50 mL) and CH2Cl2 (3 × 50 mL). The hexane fraction was evaporated under a vacuum, obtaining 0.90 g of extract. An amount of the hexane fraction was phytochemically studied and results have already been reported.15 (link)The extract was further characterized by a Gas chromatography-mass spectometry (GC-MS) fingerprint chromatogram: GC analyses were performed on an Agilent 6890N Network GC System, equipped with a flame ionization detector and a DB-35ms column (30 m × 0.25 mm id, 0.25 µm film thickness). The oven temperature was programmed from 40°C for 10 minutes, then ramped at 5°C/min to 300°C and held for 10 minutes. Injector and detector temperatures were 250°C and 270°C, respectively. The sample was injected in the splitless mode using helium as carrier gas (1 mL/min); the samples were dissolved in DCM to give a 0.125-µL/mL solution; the injection volume was 1 µL (Figure 1).
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3

Fatty Acid Methyl Esters (FAMEs) Analysis

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Fatty acid methyl esters (FAMEs) were prepared by trans-esterification of the oil using a sodium methoxide complex as catalyst, with slight modification from The American Oil Chemists’ Society method Ce 1-62 [14 ]. The analysis of FAME was conducted using a gas chromatography system (Agilent 6890N Network GC System), fitted with a flame ionisation detector and an automated liquid sampler (Agilent 7683 series). The entire system is controlled by the Chemstation® Software. FAMEs were separated on a DB-WAX capillary column (30 m × 0.25 mm ID, 0.25 μm film thickness). All instruments were supplied by Agilent Technologies Inc., Santa Clara, CA, USA. The column was initially set at 100 °C for 2 min, before being increased to 230 °C at 5 °C/min and lastly held for 10 min at 230 °C. The carrier gas was helium (flow rate = 1.0 mL/min) controlled at 103.4 kPa. The sample volume of 1 μL was injected with a split ratio of 1:20. Peak identification was done by comparison to FAMEs standard (Supelco Park, Bellefonte, PA, USA). The fatty acid profile was expressed in % using the area normalisation method, based on the following equation: Individual FAME areaTotal area×100%
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4

Amino Acid Composition Analysis

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Total protein was quantified using the Pierce BCA Protein Assay Kit (Waltham, MS, USA). Cyanophycin and phycoerythrin are both protein-based compounds, so to avoid double counting, their mass fractions were subtracted from the total protein content. Proteins were hydrolyzed, derivatized and analyzed on an Agilent 5973 Mass Detector with an Agilent 6890N Network GC System on an HP-5 column to determine the amino acid composition following the method by Antoniewicz et al. [64 (link)].
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5

Fatty Acid Composition Analysis by GC-MS

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Fatty acid composition was identified by Gas chromatography-mass spectrometry (GC-MS) methodology using an Agilent 6890N Network GC system (Agilent Technologies). The chromatograph gas was fitted with a splitless injector for a low background DB-5MS fused silica capillary column (50 m × 0.25 mm i.d. × 0.25 µm film in thickness). The oven temperature was initially held at 175 °C for 13.5 min, then increased to 185 °C at a heating rate of 2 °C/min up and held isothermal for three minutes. Injector and FID detector temperature were held at 220 and 280 °C. The identification of compounds was carried out by Chem-Station software package (Agilent Technologies). FAMEs were identified by comparison of their retention time with regard to pure standards and were quantified according to their percentage area in the lipid fraction.
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6

GC-MS Analysis of Chemical Compounds

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An Agilent 6890N Network GC system (Agilent Technologies) equipped with HP-5MS fused silica capillary column (30 m × 0.25 mm i.d. × 0.25 μm film thickness) supplied by Agilent and coupled to a mass selective detector (MSD5973, ionization voltage 70 eV; all Agilent, Santa Clara, France) was used. Helium was used as a carrier gas at 1 ml/min flow rate. The GC oven temperature was held at 60°C for 2 min and then programmed to rise from 60 to 300°C at a rate of 5°C/min. The split/splitless injector (splitless mode) temperature was set to 280°C. The components were identified by careful examination of fragmentation patterns [15 ] and spectral data obtained from the Wiley and NIST libraries. Determination was carried out in duplicate.
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7

Fecal Bile Acid and Sterol Analysis

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Feces were collected over 24 h from the cages of individually housed mice on day 4 of the 5-day stress regime. Samples were dried for 24 h at 50°C and pulverized. Total bile acids and neutral sterols were extracted and analyzed by a gas–liquid chromatography (Grundy et al. 1965 (link); Miettinen 1982 (link)) in a system (Agilent 6890N Network GC System, Agilent Technologies, Santa Clara, CA) equipped with a 50 m long nonpolar Ultra 1 capillary column for bile acids and Ultra 2 capillary column for neutral sterols. Standards (Sigma-Aldric and Steraloids Ltd, Newport, RI) were run to identify the following individual bile acids: cholic acid, chenodeoxycholic acid, β-muricholic acid, deoxycholic acid, lithocholic acid, isolithocholic acid, and epideoxycholic acid. Fecal neutral sterols included cholesterol, coprostanol, and the following plant sterols: campesterol, campestanol, stigmasterol, sitosterol, sitostanol and avenesterol.
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8

GC-MS Analysis of Propofol in Microdialysis

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GC–MS analysis was performed using an Agilent 6890N Network GC System (Agilent Technologies, Santa Clara, California) coupled to an Agilent 5973 Mass Selective Detector (Agilent Technologies, Santa Clara, California). Chromatographic separation was performed by an HP 5 MS GC Column, 30 m x 0.25 mm x 0.25 μm (Agilent Technologies, Santa Clara, California). Hereby an initial step of 60°C for 1 min was succeeded by a temperature ramp of 30°C/min up to a temperature of 225°C and a subsequent temperature ramp of 75°C/min up to a temperature of 300°C, which was held for 5 min. The mass spectrometer was operated in selected ion monitoring mode with m/z ratios for propofol detection of 117.1, 163.2, and 178.1 and included a solvent delay of 3 min and a dwell time of 10 ms. Laminar flow in in vitro microdialysis experiments for permeability testing was obtained using a Harvard Apparatus standard infusion syringe pump (Harvard Apparatus, South Natick, Massachusetts).
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9

Lipid Composition Analysis of Intramuscular Fat

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The fatty acid composition of LD muscle IMF was determined by fat extraction [14 (link)]. Ten grams of minced meat were homogenized at 3000 rpm for 1.5 min by UltraTurrax using 0.003% butylhydroxytoluene (BHT) with 200 ml Folch solution (chloroform–methanol mix 2:1). After paper-filtering (Whatman No. 1) the homogenized liquid, Folch solution (50 mL) was added. After filtering, the solution was poured out into a decantation infundibulum and mixed with 8% sodium chloride (80 mL) for 24 h. The solvent, collected from the lipidic phase, was evaporated. After evaporation, the fatty acid composition was analyzed using gas chromatography (Agilent 6890 N Network GC System). As a carrier gas, helium was used at a division ratio of 1:50 with a 3.2 ml per minute flow rate. The undecanoic acid methyl ester was used as an internal standard to quantify the methyl esters of fatty acids.
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10

Saccharide and Organic Acid Quantification

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The saccharide and organic acid contents were analyzed by GC-FID and quantified with an internal standard method [16 (link)]. Samples weighing 5 g were extracted by 40 mL distilled water. After centrifugation, supernatant was collected and filtered by 0.45 μm filter. D-xylose and succinic acid were separately used as internal standards for the qualifications of saccharides and organic acids, which were mixed with extracts and dried by nitrogen and phosphorus pentoxide. Hexamethyldisilazane/trimethylchlorosilane/pyridine (2:1:10, V/V/V) was then added for dissolution and detection. Agilent 6890 N network GC system with DB-1 chromatographic column and Agilent 7683 autosampler were used for determination. Values were presented as mean ± SD mg·g−1 fresh weight (FW) (n = 3).
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