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Sybr green real time pcr master mix

Manufactured by Yeasen
Sourced in China, United States

SYBR Green Real-time PCR Master Mix is a ready-to-use solution for real-time PCR amplification and detection. It contains SYBR Green I dye, DNA polymerase, dNTPs, and necessary buffers and reagents for real-time PCR analysis.

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34 protocols using sybr green real time pcr master mix

1

Quantitative Analysis of PER3 Expression

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Total RNA was purified using Mini BEST Universal RNA extraction KIT (TaKaRa, Japan), and cDNA was synthesized using the Prime-Script RT Master Mix (TaKaRa, Japan) according to the manufacturer's instructions. Real-time PCR was performed using SYBR Green Realtime PCR Master Mix (Yeasen, China). Samples from each experiment were analyzed in triplicate. The primer sequences used in this study were as follows:
GAPDH: GGACTCATGACCACAGTCCA (F) and CCAGTAGAGGCAGGGATGAT (R)
PER3: AGCGTTCAAGCAAACAGTGAG (F) and CAAGCAGGTCAACAAAGTGAGA (R)
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA from tissues and cultured cells was extracted using TRIzol Reagent (Invitrogen, USA) and reverse transcribed into cDNA using a PrimeScript RT Reagent Kit (TaKaRa, Japan) according to the manufacturer’s instructions. Then, quantitative real-time polymerase chain reaction (qRT-PCR) was performed with SYBR Green Real-time PCR Master Mix (Yeasen, Shanghai, China) following the manufacturer’s instructions. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal reference gene for quantification of circRNA and mRNA. The relative RNA expression levels were analyzed by utilizing the 2-ΔΔCt method. Each reaction was conducted in triplicate independently.
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3

Quantification of Gene Expression by qRT-PCR

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The expression of related genes was quantified using qRT-PCR. A total RNA extraction kit was purchased from OMEGA, Britain. A first Strand cDNA Synthesis Kit and SYBR Green Real-time PCR Master Mix were purchased from Yeasen, China. Sequences of the primers for the genes of interest are as follows: MMP3 (F) 5′-GAAACGGGACAAGTCTGTGGAG-3′, (R) 5′-ATGAAAATGAAGGGTCTTCCGG TCC-3′. MMP13 (F) 5′-GCTGGACTCCCTGTTG-3′, (R) 5′-TCGGAGCCTGT CAA CT-3′. COL2A1 (F) 5′-GGGAATGTCCTCTGC GATGAC-3′, (R) 5′-GAAGGGGA TCTCGGGGTTG-3′. GAPDH (F) 5′-AACATCAAATGGGGTGAGGCC-3′, (R): 5′-GTTGTCATGGATGACCTTGGC-3′. GPX4 (F) 5′- GATGGAGCCCATTCCTGAAC C-3′, (R) 5′-CCCTGTACTTATCCAGGCAGA-3′. NRF2 (F) 5′-ACCAAGGGGCAC CATATAAAAG-3′, (R) 5′-CTTCGCCGAGTTGCACTCA-3′. Parkin (F) 5′-TCCTTC GTCCACTGTTTCACA -3′, (R) 5′-GGGCATTGCTCTCAGTCACAT -3′.
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4

Comprehensive Gene Expression Analysis by RT-qPCR

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Total RNA was extracted with the TRIzol reagent following the standard instructions. The purified RNA was treated with DNase to remove DNA contamination and the first strand of cDNA was synthesized using a cDNA synthesis kit (11123ES60, Yeasen, China). The synthesized cDNA was used as a template for qRT-PCR using the SYBR-Green Real-Time PCR Master Mix (11202ES08, Yeasen, China). GAPDH was utilized as the internal reference gene for normalization of target gene expression. The RT-qPCR primers are listed in Table 1.17 (link)

Primer Sequences

NamePrimer Sequences
Ki67Forward5’-AAACCCCACCAAGTAAAACA-3’
Reverse5’-CCAAGGCAAGCTCAGGAC-3’
GPX4Forward5’-AGTGGATGAAGATCCAACCCAAGG-3’
Reverse5’-GGGCCACACACTTGTGGAGCTAGA3’
PTGS2Forward5’-TGACCAGAGCAGGCAGATGA-3’
Reverse5’-CCAGTAGGCAGGAGAACATATAACA-3’
SLC7A11Forward5’-GTCTGGAGAAACAGCCAAGG-3’
Reverse5’-CGGAGTTCCTCGAATAGCTG-3’
ACSL4Forward5’-GTAATTGGTGGACAGAACATC-3’
Reverse5’-TACTCTCCTGCTTGTAACTTC-3’
GAPDHForward5’-AAAGAAGCTCAACTACATGG-3’
Reverse5’-TGCAAAGAATGCGTCCCAGAG-3’
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5

Quantitative Real-Time PCR Analysis of mRNA Expression

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In order to analyze the expression level of mRNA, a total of 0.1 μg RNA was utilized to conduct reverse transcription and produce complementary DNA (cDNA). This process was carried out with the use of the First Strand cDNA Synthesis Kit (#FSK-101, TOYOBO, Tokyo, Japan) which contained an oligo (dT) primer (5′-TTTTTTTTTTTTTTTTTTTT-3′) following the manufacturer’s guidelines. To perform quantitative real-time PCR, the SYBR Green Real-time PCR Master Mix (#11201ES03, Yeasen, Shanghai, China) and the LightCycler480 II system (Roche, Basel, Switzerland) were used. Amplification was carried out according to the following protocol: 50 °C for 2 min, 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s, 60 °C for 15 s, and 72 °C for 30 s. Using the 2−ΔΔCt method, the relative expression values of the target mRNAs were normalized to those of GAPDH in each sample. All primers used in this study were listed in Table 1.
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6

RNA Isolation and Real-Time qPCR Analysis

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Total RNA from the murine skin biopsies and RAW264.7 cells was isolated and purified by using the RNAsimple total RNA kits (Tiangen). Subsequently, total RNA (500 ng per unit) was reversely transcribed by the HifairTM 1st Strand cDNA Synthesis SuperMix regents (Yeasen, Shanghai, China) with consecutive incubation of 25 °C for 5 min, 42 °C for 30 min. and 85 °C for 5 min. Real-time quantitative PCR analyses were conducted with the SYBR® Green Realtime PCR Master Mix regents (Yeasen) according to the directions on the 7500 Fast Real-Time PCR System (Applied Biosystems, Foster city, CA, USA) for PCR amplification with holding stage (95 °C for 30 s), cycling stage (95 °C for 15 s and 60 °C for 34 s for 40 cycles), and melt curve stage using the gene-specific primers in Supplementary Table S3 by the ΔΔ Ct method.
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7

Gene Expression Analysis of Graft Samples

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The graft samples were placed at −80°C for temporary storage. Total RNA was
extracted from graft and cell samples by RNAiso Plus (Takara Biomedical
Technology, Dalian, China). Then the stable cDNA was obtained by using the Hieff
First Strand cDNA Synthesis Super Mix (Yeasen, Shanghai, China). To accurately
assess the mRNA expression, the qRT-PCR with SYBR Green real-time PCR Master Mix
(Yeasen, Shanghai, China) was used. The β-actin was used as the internal
reference. Primer sequences were shown below:
CD206: Forward Primer 5′- CTCTGTTCAGCTATTGGACGC-3′;

Reverse Primer 5′-TGGCACTCCCAAACATAATTTGA-3′;

Arg-1: Forward Primer 5′-CTCCAAGCCAAAGTCCTTAGAG-3′;

Reverse Primer 5′- GGAGCTGTCATTAGGGACATCA-3′;

Fizz-1: Forward Primer 5′- CCAATCCAGCTAACTATCCCTCC-3′;

Reverse Primer 5′-ACCCAGTAGCAGTCATCCCA;

PPARγ: Forward Primer 5′-GGAAGACCACTCGCATTCCTT-3′;

Reverse Primer 5′- GTAATCAGCAACCATTGGGTCA-3′;

Fabp4: Forward Primer 5′-AAGGTGAAGAGCATCATAACCCT-3′;

Reverse Primer 5′- TCACGCCTTTCATAACACATTCC-3′;

C/EBP-α: Forward Primer 5′-CAAGAACAGCAACGAGTACCG-3′;

Reverse Primer 5′-GTCACTGGTCAACTCCAGCAC-3′;

Adipoq: Forward Primer 5′-TGTTCCTCTTAATCCTGCCCA-3′

Reverse Primer 5′-CCAACCTGCACAAGTTCCCTT-3′;

β-actin: Forward Primer 5′-GGCTGTATTCCCCTCCATCG-3′

Reverse Primer 5′-CCAGTTGGTAACAATGCCATGT-3′

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8

Macrophage Polarization in Brain Tissue

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Brain tissue was rapidly removed from the corpus callosum and the mRNA levels of M1 macrophage markers (CD86, iNOS) and M2 macrophage markers (CD206, Arg1), and inflammatory factors (IL‐1β, TNFα, IL‐6, IL‐10), were measured using quantitative real‐time PCR (qRT‐PCR). Total RNA was extracted using TRIzol reagent and complementary DNA synthesis was performed using a Revert Aid First Strand cDNA Synthesis Kit (Yeasen) according to the manufacturer's instructions. Quantitative real‐time PCR was performed using a SYBR Green Real Time PCR Master Mix (Yeasen) on a StepOne Plus Real‐Time PCR System (Applied Biosystems). Beta actin was used as the reference genes. All quantitative PCR was performed in triplicate using four independent purified RNA samples. The primer sequences are listed in Table 1.
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9

Isolation and Quantification of Colonic RNA

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Colonic tissues were disrupted using lysis beads in TRIzol extraction reagents (Tiangen, Beijing, China) and Total RNA from colonic homogenates and CCD-18Co cells were isolated using RNAsimple total RNA kit (Tiangen) and followed by reverse transcription using HifairTM 1st Strand cDNA Synthesis SuperMix (Yeasen, Shanghai, China). Real-time PCR was performed with SYBR® Green Real-time PCR Master Mix (Yeasen) by the Applied Biosystems 7500 Fast Real-Time PCR System (Foster city, CA, USA). The primers for PCR amplification were listed in Supplementary Table S1. ALL expression levels were normalized to an internal housekeeping gene (GAPDH for human samples and β-actin for mouse samples) using the ΔΔ Ct method.
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10

RNA Extraction, cDNA Synthesis, and qRT-PCR

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RNA was extracted using TRIzol reagent (Invitrogen, USA). cDNA was synthesized using prime Script RT kit (TaKaRa, Japan). qRT-PCR was performed with SYBR Green Realtime PCR Master Mix (Yeasen, Shanghai, China) using the following PCR primers: RNF128, fwd: 5ʹ-CTGCTCGAAGGCTACGGAATG-3′ and rvs: 5ʹ-GTGTGCGTAGTTGAAGCCTTCC-3ʹ. GAPDH, fwd: 5ʹ-GTCTCCTCTGACTTCAACAGCG-3ʹ and rvs: 5ʹ-ACCACCCTGTTGCTGTAGCCAA-3ʹ.
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