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Cy3 conjugated donkey anti mouse

Manufactured by Jackson ImmunoResearch
Sourced in Japan, United States, United Kingdom

Cy3-conjugated donkey anti-mouse is a secondary antibody used for detection and visualization in various immunoassays, such as immunohistochemistry, Western blotting, and flow cytometry. It is produced by conjugating the Cy3 fluorescent dye to an affinity-purified donkey-derived antibody that is specific for mouse immunoglobulins.

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20 protocols using cy3 conjugated donkey anti mouse

1

Immunohistochemical Analysis of Skin Biopsies

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Skin biopsies (3 mm) were obtained, processed and analyzed according to consensus standards (Lauria et al., 2010 (link)). Tissue was placed in Zamboni's fixative (NewcommerSupply, Middleton, WI, USA) for 24hrs at room temperature, rinsed with 0.01M phosphate buffered saline (PBS) and placed in cryoprotectant (20% glycerol in 0.1M Sorrenson's phosphate buffer) for a minimum of 24hrs at 4°C. Serial frozen sections 70μm thick were made. Sections were permeabilized in 0.5% Triton X-100 for 30 minutes at room temperature, incubated in TNB (0.1M Tris HCl, 0.15M NaCl and 0.5% Boehringer milk powder) with 1% Triton X-100 for 2hrs at room temperature, then treated overnight at 4°C with primary mouse antibodies against myelin basic protein (Calbiochem Cat#NE1019-100ul, 1:1000) and anti-human PGP9.5 from rabbits (ABDserotec Cat#7863-0504, 1:1000) diluted in TNB with 0.5 % triton X-100. Sections were washed in 0.01M PBS with 0.5% triton X-100 and fluorescent secondary antibodies FITC-conjugated donkey anti-rabbit and Cy3-conjugated donkey anti-mouse (Jackson ImmunoResearch; 1:500) applied for 2hrs at room temperature. Sections were washed in 0.01M PBS with 0.5% Triton X-100, then 1mM CuSO4 for 10 minutes, and mounted on glass slides with VECTASHIELD Mounting Medium (Vector Labs, Burlingame, CA).
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2

Immunostaining of Pancreatic Tissues

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Paraffin-embedded mouse and human pancreas sections were processed and stained as previously described (human donor information is provided in Table S2) [21] (link). Sections were stained using primary antibodies against somatostatin (Santa Cruz Biotechnology sc-7819: 1:250), TALK-1 (Novus Biologicals #NBP1-83071; 1:175) or TALK-1a (Antibody Verify AAS72353C; 1:250), glucagon (Proteintech #15954-I-AP: 1:500), and the endoplasmic reticulum marker GRP94 (Novus Biologicals #NB300-619; 1:100); secondary antibodies used were Alexa Fluor 488-conjugated donkey anti-rabbit (Jackson Immunoresearch #711-546-152; 1:300), DyLight 650-conjugated donkey anti-goat (Thermo Fisher #SA5-10089; 1:250), and Cy3-conjugated donkey anti-mouse (Jackson Immunoresearch #715-166-150; 1:500).
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3

Immunofluorescence Labeling of Lamin A and NF-YA

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Cells were fixed with 2% formaldehyde, permeated with 0,05% Triton X-100, blocked 1h with 5% BSA, and subjected to staining using anti-lamin A (Santa Cruz), anti-NF-YA monoclonal (Santa Cruz), Cy3-conjugated donkey anti-mouse and Cy2-conjugated donkey anti-rabbit (Jackson Immuno Research Laboratories). Slides were analyzed within 24 h. As control, single immunofluorescence labeling for each antibody, and immunofluorescence labeling without primary antibody was performed (data not shown). All experiments were performed several times with similar results. Images were recorded by using a Zeiss LSM 510 Meta confocal laser scanning microscope equipped with a 20X and 60X/1.23 NA oil immersion objective. As laser (488 and 514 nm), and HeNe laser (543 nm) were used to excite the fluorophores. The LSM 510 R. 3.2 META (Zeiss) image analysis software was used.
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4

Immunochemical Profiling of Cellular Markers

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Rabbit and mouse IgG were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Primary antibodies used in this study include rabbit and mouse anti-FLAG (Sigma-Aldrich Co., St. Louis, MO); mouse anti-myc, chicken anti-GAPDH, and rabbit anti-D2R (Millipore, Billerica, MA); rabbit anti-zDHHC8 (Santa Cruz Biotechnology); mouse anti-GM130 (BD Biosciences, San Jose, CA); mouse anti-GFP (Life Technologies, Carlsbad, CA), and rabbit anti-phospho-p44/42 MAPK (pERK) and rabbit anti-p44/42 MAPK (total ERK) (Cell Signaling, Beverly, MA). HRP-conjugated goat anti-mouse, goat anti-rabbit and donkey anti-chicken secondary antibodies were purchased from Jackson ImmunoResearch (West Grove, PA). Fluorescent secondary antibodies include Alexa Fluor 488-conjugated goat anti-rabbit, Alexa Fluor 555-conjugated goat anti-mouse, (Molecular Probes, Eugene, OR), and Cy3-conjugated donkey anti-mouse (Jackson ImmunoResearch).
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5

Immunohistochemical Analysis of Skin Biopsies

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Skin biopsies (3 mm) were obtained, processed and analyzed according to consensus standards (Lauria et al., 2010 (link)). Tissue was placed in Zamboni's fixative (NewcommerSupply, Middleton, WI, USA) for 24hrs at room temperature, rinsed with 0.01M phosphate buffered saline (PBS) and placed in cryoprotectant (20% glycerol in 0.1M Sorrenson's phosphate buffer) for a minimum of 24hrs at 4°C. Serial frozen sections 70μm thick were made. Sections were permeabilized in 0.5% Triton X-100 for 30 minutes at room temperature, incubated in TNB (0.1M Tris HCl, 0.15M NaCl and 0.5% Boehringer milk powder) with 1% Triton X-100 for 2hrs at room temperature, then treated overnight at 4°C with primary mouse antibodies against myelin basic protein (Calbiochem Cat#NE1019-100ul, 1:1000) and anti-human PGP9.5 from rabbits (ABDserotec Cat#7863-0504, 1:1000) diluted in TNB with 0.5 % triton X-100. Sections were washed in 0.01M PBS with 0.5% triton X-100 and fluorescent secondary antibodies FITC-conjugated donkey anti-rabbit and Cy3-conjugated donkey anti-mouse (Jackson ImmunoResearch; 1:500) applied for 2hrs at room temperature. Sections were washed in 0.01M PBS with 0.5% Triton X-100, then 1mM CuSO4 for 10 minutes, and mounted on glass slides with VECTASHIELD Mounting Medium (Vector Labs, Burlingame, CA).
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6

Immunofluorescence Analysis of Neuroinflammation

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Mice were deeply anesthetized and intracardially perfused with ice-cold 4% paraformaldehyde (PFA) at 21-25 dpi (N = 2-3 per group). Collected brains were post-fixed in 4% PFA for 2 h and equilibrated with 30% sucrose for at least one night. Thirty-micrometer-thick coronal sections were serially cut on a frozen microtome including the whole striatum to perform immunofluorescence experiments as previously described [18 (link)]. The following primary antibodies were used overnight at 4°C in Triton X-100 0.25%: rabbit anti-Iba1 (1:750, Wako), mouse anti-TNF (1:1500, Abcam), rabbit anti-GFAP (1:500, Dako), rat anti-CD3 (1:300, Biorad). After being washed, sections were incubated with the secondary antibody Alexa-488 conjugated donkey anti-Rabbit or anti-Rat (1:200, Invitrogen); Cy3-conjugated donkey anti-mouse (1:200, Jackson) for 2 h at RT. Nuclei were stained with DAPI (1 μl/ml; Sigma Aldrich). Images were acquired using a Nikon Eclipse TI2 confocal laser-scanner microscope with 20x, 40x and 60x objectives and were processed using ImageJ software. Details of images acquisition and analysis are reported in the Supplementary Materials.
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7

Immunostaining Embryos for Confocal Imaging

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Embryos were stained with antibodies as previously described [37 (link)] and observed with a Zeiss LSM 700 or LSM 810 confocal laser microscope, and the results were analyzed using the LSM image browser (Zeiss, Jena, Germany) and ImageJ software (Version 13.0.6, NIH, Bethesda, MD, USA) [38 (link)]. We used the following primary antibodies: rat anti-Elav (7E8A10, 1:500) [39 (link)], mouse anti-NICD (C17.9C6, 1:250) [40 (link)], mouse anti-Crumbs (Cq4, 1:250) [41 (link)], rat anti-E-Cadherin (DCAD2 1:500) [42 (link)], guinea pig anti-FL-Hrs (GP30, 1:1000) [43 (link)], rabbit anti-Rab7 (1:5000) [44 (link)], rabbit anti-Rab11 (1:4000) [44 (link)], rabbit anti-GM130 (1:50, Abcam, Cambridge, MA, USA) [45 (link)], rabbit anti-GFP (1:250, 598 MBL) [46 (link)], and rat anti-GFP (1:250, Nacalai Tesque, Kyoto, Japan).
We used the following secondary antibodies: Cy3-conjugated donkey anti-mouse, Cy5-conjugated anti-rabbit, Cy-5 conjugated anti-rat, Cy5-conjugated anti-guinea pig, Alexa488-conjugated donkey anti-rat, and Alexa488-conjugated donkey anti-rabbit (all from Jackson Immunoresearch, West Grove, PA, USA).
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8

Dual Immunofluorescence Labeling of Lung Sections

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The double immunofluorescence antigen labelling of frozen human lung sections was performed with LeA, LeX, SLeA and SLeX, with EpCAM antibody. The frozen human lung sections were fixed in Acetone/Ethanol (75:25) for 10 min and washed twice with TBS. The sections were blocked with 5% normal donkey serum (Jackson ImmunoResearch Lab Inc, West Grove PA) for an hour at room temperature. The sections were incubated with rabbit anti-EpCAM (1:300, Abcam, Cat#: ab32392) plus (1) FITC conjugated mouse anti-LeA (1:100, Santa Cruz, cat#: sc-51512) and (2) FITC conjugated mouse anti-human CD15 (LeX, 1:50); (3) mouse anti-SLeA (1:500, CA19.9) and (4) Rat anti-SLeX (1:200, BD 555946) overnight at 4 °C. The slides were washed three times in TBS and incubated with Alexa 647 conjugated donkey anti-rabbit secondary antibodies (Jackson ImmunoResearch Lab, 1:300) for (1) and (2) and CY3 conjugated donkey anti-mouse (Jackson ImmunoResearch Lab, 1:300) and Alexa 647 conjugated donkey anti-rabbit secondary antibodies (Jackson ImmunoResearch Lab, 1:300) for (3) and CY3 conjugated donkey anti-rat (Jackson ImmunoResearch Lab, 1:300) and Alexa 647 conjugated donkey anti-rabbit secondary antibodies (Jackson ImmunoResearch Lab, 1:300) for (4). Samples were then washed three times with TBS and mounted with Prolong Gold anti-fade mounting media containing DAPI (Invitrogen).
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9

Immunohistochemistry for Neurotransmitter Markers

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Selected sections at the level of the dDG were processed using the MOM kit as described above. Sections were incubated overnight at RT in a solution containing rabbit anti-GFP (1:2000; Invitrogen), guinea pig anti-VGLUT2 (1:5000; Millipore) and mouse anti-GAD65 (1:100; Millipore) or mouse anti-GFP (1:100; Invitrogen), guinea pig anti-VGLUT2 (1:5000; Millipore) and rabbit anti-VGAT (1:1000; Synaptic System) diluted in MOM diluent. After several rinses in KPBS, they were incubated for 2 h in Alexa488-conjugated donkey anti-rabbit IgG (1:200; Invitrogen), Cy5-conjugated donkey anti-guinea pig (1:100; Jackson ImmunoResearch Laboratories, Inc.), and Cy3-conjugated donkey anti-mouse (1:100; Jackson ImmunoResearch Laboratories, Inc.) or Alexa488-conjugated donkey anti-mouse IgG (1:200; Invitrogen), Cy5-conjugated donkey anti-guinea pig (1:100; Jackson ImmunoResearch Laboratories, Inc.), and Cy3-conjugated donkey anti-rabbit (1:100; Jackson ImmunoResearch Laboratories, Inc.) diluted in MOM diluent. After several rinses in KPBS, all sections were then mounted on superfrost-coated slides, dried overnight at RT and coverslipped with Fluoromount. The specimens were analyzed with confocal microscope (Zeiss).
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10

Visualization of Biocytin-Labeled Neurons

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After several washes in 0.1 M PB, slices were cryoprotected with 10%, then 20% sucrose solution in 0.1M PB than frozen in liquid nitrogen. The sections were incubated for 2 hr in Alexa-488 conjugated streptavidin (1:400, Molecular Probes) solved in TBS (0.1 M; pH = 7.4) at room temperature to visualize the biocytin labeled cells. After several washes in TBS, sections were blocked in normal horse serum (NHS, 10%) made up in TBS, followed by incubation in mouse anti-α-actinin (1:20,000, Sigma-Aldrich) diluted in TBS containing 2% NHS and 0.1% Triton X-100 at room temperature for 6 hr. Following several washes in TBS, Cy3 conjugated donkey anti-mouse (1:500, Jackson ImmunoResearch) secondary antibody was used to visualize the immunoreactions. After several washes in TBS, then in 0.1 M PB, slices were counterstained with DAPI (4′,6-diamidino-2-phenylindole, Thermo Fisher Scientific). Sections were then mounted on slides in Vectashield (Vector Laboratories). Images were taken with LSM 880 confocal laser scanning microscope (Carl Zeiss AG, Oberkochen, Germany) using 40× oil-immersion objective (1.4 NA). Confocal image z-stack was tilted and panned manually to match with the in vivo two-photon z-stack, allowing to profile imaged interneurons. During this process biocytin labeled neurons were used as a reference point.
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