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13 protocols using imagexpress confocal microscope

1

Caspase-3/7 Activation Assay

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Caspase-3/7 activation was measured after 48 h of incubation with compounds using the CellEventTM Caspase-3/7 Green Detection reagent following the manufacturer’s instructions (Thermo Fisher Scientific, Waltham, MA, USA). In brief, cells were incubated with compounds for 48 h before the assay. On the day of the assay, the Caspase-3/7 reagent was mixed with complete BrainPhys media to a final concentration of 5 μM and added to cells. After incubation for 30 min at 37 °C, cells were imaged using an ImageXpress Confocal microscope (Molecular Devices, San Jose, CA, USA).
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2

EdU Proliferation Assay in Breast Cancer Cells

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MDA-MB-231 and MDA-MB-468 cells were treated with various concentrations of PP or 0.1% DMSO. The EdU incorporation assay was performed using an EdU labeling/detection kit (Ribobio, Guangzhou, China). The operating methods were performed as previously described [53 (link)]. The cells were subsequently observed with an imageXpress® confocal microscope (Molecular Devices, USA).
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3

Measurement of Intracellular ROS Levels

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The intracellular ROS levels were measured as previously described25 (link),26 (link). Briefly, the HCT-116 cells were incubated with serial dilutions of WA for 24 h. Then incubated in the dark with 10 mmol/L oxidation-sensitive fluorescent probe DCFH-DA (Beyotime Biotechnology) for 20 min at 37 °C. The fluorescence intensity was then measured with a C6 flow cytometer (BD Biosciences, NJ, USA) or an imageXpress confocal microscope (Molecular Devices, CA, USA).
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4

Calcium Imaging of Neurospheroids

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Neurospheroids were transduced with Incucyte Neuroburst Orange reagent (Satorius, 4736). Neuroburst Orange reagent is a lentivirus genetically encoding a fluorescence calcium indicator driven by the synapsin promoter. For the labeling, Neuroburst Orange reagent was added to individual wells of the microBrain 3D 384-well plate at a volume of 5μL per well. Activity was recorded after 1 week of incubation, to allow expression of the calcium indicator. For recording, we used ImageXpress Confocal Microscope (Molecular Devices) with a sampling rate of 25 frames per second for 500 seconds. Multiple Regions of Interest (ROI), representing different neurons on the neurospheroid, were selected for analysis on MetaXpress software (Molecular Devices). Recorded activity was plotted as Relative Fluorescence Units (RFU) vs Time (in seconds) using GraphPad Prism version 7.
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5

Quantifying EGF Receptor Signaling

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HeLa MZ cells were starved in serum‐free medium for 4 h and treated with 100 nM EGF as indicated 54. Cells were then fixed and stained with antibodies to the EGF receptor, followed by fluorescently labelled secondary antibodies. The EGF receptor signal was then quantified by automated microscopy using the ImageXpress® confocal microscope (Molecular Devices™) after segmentation of the granular structures containing the EGFR signal 55, using Custom Module Editor™ from MetaXpress™. The obtained mask was then applied to the EGF receptor fluorescent micrographs, and the integrated intensity (sum of all pixel intensities) is extracted for each cell (approx. 5,000 cells analysed per condition).
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6

Mitochondrial Function in PCOS Granulosa Cells

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cGCs were cultured with 10 µm/l Mito-Tracker Red CMXRos staining solution for 30 min at 37°C in 5% CO2. After washing thrice with PBS buffer. Then, cGCs were stained using 10 µg/ml Hoechst 3342, incubated for 10 min at 37°C in 5% CO2, and then washed thrice with PBS buffer (Seville) before placing in fresh medium. The fluorescence intensity of mitochondrial Mito-Tracker Red CMXRos was detected immediately with an ImageXpress confocal microscope (Molecular Devices, LLC). The captured images were assessed, using ImageJ Imaging System software (version 1.51; National Institutes of Health). Mito-Tracker Red levels were assessed by calculating the mean red fluorescence intensity. This experiment involved 3 patients with CON and 4 patients with PCOS.
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7

Mitochondrial Membrane Potential in cGCs

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The MMP of cGCs was measured using the fluorescent dye 5,6-dichloro-2-[3[(5,6-dichloro-1,3-diethyl-1,3-dihydro-2H-benzimidazole-2-ylidene)-1-propen-1-yl]-1,3-diethyl-1H benzim-idazolium, monoiodide (JC-1; Cayman Chemical Company). cGCs were collected and labeled with 10 µmol/l JC-1 fluorescent probe in 5% CO2 at 37°C for 30 min. Then were washed thrice with PBS buffer. The aforementioned images were captured using ImageXpress confocal microscope (Molecular Devices, LLC) to demonstrate green fluorescence and red fluorescence. Then, captured images were further analyzed using ImageJ Imaging System software (version 1.51). The fluorescence was expressed as a ratio of red to green. This experiment involved 4 patients with CON and 3 patients with PCOS.
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8

Quantifying Neuronal Protein Localization

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Images were acquired using a 60× objective on a Nikon Eclipse TE2000-U epifluorescence microscope and exported into CellProfiler (Carpenter et al., 2006 (link)) to analyze the number of pixels positive for each antibody normalized by neurite length. To avoid potential biases in results related to distance from the soma or dendritic order, we quantified the signal along neurite segments at various distances from the cell body and averaged. Manual analysis of microscopy data was performed in MetaMorph. N-SIM images were captured on a Nikon N-SIM Structured Illumination superresolution microscope. Confocal images were captured on a Nikon A1R+ confocal laser microscope system. Wide-field fluorescent images were captured using a Molecular Devices ImageXpress confocal microscope at 40×. Western blots were quantified using ImageJ (National Institutes of Health). Numerical data from each experimental repetition were exported and pooled for descriptive and statistical analysis in Prism 5 (GraphPad). All experiments were carried out a minimum of three times. In each experiment, each experimental condition contained at least triplicate samples. qPCR data are reported as geometric means ± 95% confidence intervals. All other data are reported as means ± SEM.
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9

Protein-Protein Interaction Assay

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The TECs were fixed in 4% paraformaldehyde and permeabilized in 0.75% Triton X-100. The PLA assay was carried out according to manufacturer’s instructions (DUO92101, Sigma) with rabbit anti-USP36 antibody (14783-1-AP, Proteintech, 1:100), rabbit anti-ubiquitin antibody (10201-1-AP, Proteintech, 1:100) and mouse anti-DOCK4 antibody (sc-100718, santa, 1:50). The signal was visualized using an imageXpress confocal microscope (Molecular Devices) and analyzed by Image J software.
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10

Measuring Intracellular ROS in cGCs

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The 2,7-dichlorodihydrofluorescein diacetate (DCFH-DA) fluorescent probe (Cayman Chemical Company) was employed to detect the intracellular ROS levels. Briefly, cGCs were resuspended using 10 µmol/l DCFH-DA, incubated for 30 min at 37°C in the dark, and then washed thrice with PBS buffer (cat. no. 02-024-1ACS; Biological Industries; Sartorius AG). cGCs were resuspended using 10 µg/ml Hoechst 3342 (Cayman Chemical Company) and incubated for 10 min in the dark at 37°C, and then washed thrice with PBS buffer. The cell fluorescence intensity was detected with an ImageXpress confocal microscope (Molecular Devices, LLC), and the ROS levels were expressed as the mean green fluorescence intensity. This experiment involved 7 patients with CON and 5 patients with PCOS.
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