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7 protocols using 4egi 1

1

Comprehensive NSCLC Cell Line Analysis

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NSCLC cell lines (A549, H460, H1299) were kindly provided by Dr Hua Lu at Tulane University (purchased from ATCC, Manassas, VA, USA) and cultured in RPMI‐1640 medium supplemented with 10% foetal bovine serum and 1% penicillin and streptomycin. All experiments were performed with mycoplasma‐free cells. 4EGI‐1 and 4E1RCat were purchased from SelleckChem (Houston, TX, USA). NSCLC formalin‐fixed, paraffin‐embedded (FFPE) tissue arrays were purchased from US Biomax (Derwood, MD, USA), containing normal lung tissues (n = 10), tumour and paired adjacent tissues from the same patients (n = 45), including 19 cases of LUAD (lung adenocarcinomas) and 26 cases of LUSC (lung squamous cell carcinomas). Protein arrays and analyses were performed in RayBiotech, Inc (Guangzhou, China) by using RayBio Human Protein Array G (Glass–chip‐based protein arrays containing 499 targets).
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2

Culturing Breast Cancer Cell Lines

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MCF7 and MDA-MB-330 (MM330) (American Type Culture Collection [ATCC], Manassas, VA, USA) were cultured in DMEM (11965; Life Technologies, Carlsbad, CA, USA) +10%FBS (26140; Life Technologies). T47D (ATCC) and ZR75.1 (ATCC) were cultured in RPMI 1640 (11875; Life Technologies) +10%FBS. MDA-MB-134VI (MM134) (ATCC) and SUM44PE (Asterand Bioscience, Detroit, MI, USA) were maintained as described previously78 (link). All lines were incubated at 37 °C in 5% CO2.
Cycloheximide (C4859; Sigma-Aldrich, St. Louis, MO, USA), 4EGI-1 (S7369; Selleck Chemicals, Houston, TX, USA), and Salubrinal (SC-202332A; Santa Cruz, Dallas, TX, USA) were dissolved in DMSO (4-X; ATCC).
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Cell Viability Assay for Drug Screening

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The cell viability was analyzed using the CellTiter-Fluor Cell Viability Assay (Promega), which measures the relative number of viable cells in a population based on the measurement of the conserved and constitutive protease activity within live cells. Briefly, PDGFRα or EGFR cells were seeded in 96-well plates with a density of 0.8 × 104 cells/well and serum starved overnight. The cells were then treated with 10 μg/ml DOX or vehicle control. The translation inhibitors, including 4EGI-1 (Selleckchem), AZD8055 (Selleckchem), and LY2584702 (Selleckchem), were added at indicated concentrations and incubated for 48 h. The CellTiter-Fluor Reagent was then added to wells and viability measured using a fluorometer (400 nmEx/505 nmEm) after incubation for 30 min at 37°C.
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4

Naive T Cell Activation and Regulation

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Single-cell suspensions from the pooled spleens and lymph nodes were enriched for CD4+ T cells with CD4 microbeads (Miltenyi Biotech). Naive (CD4+CD25CD44 CD62L+) T cells were purified from enriched CD4+ T cells on a MoFlo cytometer (DakoCytomation). Naive T cells were stimulated with plate-bound anti-CD3 (145-2C11; BioXcell; 10 μg/ml) and soluble anti-CD28 (37.5; BioXcell; 10 μg/ml) at a density of 1×106 cells/ml in complete RPMI medium supplemented with 10% fetal calf serum, 2 mM glutamine, 100 IU/ml penicillin, 0.1 mg/ml streptomycin, 10 mM Hepes, 1× nonessential amino acids (Cellgro), and 50 μM β-mercaptoethanol. Rapamycin was purchased from Cell Signaling Technology and 4EGI-1 was purchased from Selleckchem.
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5

Signaling Pathway Antibody Validation

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Antibodies against P70S6K, pP70S6K (T389), 4EBP-1, p4EBP-1 (S65), eIF4E, eIF4G, cyclinD1, AKT, and SGK3 were obtained from Cell Signaling Technology (Beverly, MA, USA). Anti-INPP4B and anti-tubulin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibody against HPIP was obtained from Proteintech (Chicago, IL, USA). RAD001 and 4EGI-1 were purchased from Selleck (Houston, TX, USA) and Calbiochem (Darmstadt, Germany), respectively.
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6

Cell Line Maintenance for Alzheimer's Research

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HEK293 (human embryonic kidney) cell lines and SH-SY5Y (human neuroblastoma) cell lines were obtained from the Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China). HEK293 were maintained in DMEM (Gibco, Rockville, MD, USA) with 10% of fetal bovine serum (FBS, Hyclone). SH-SY5Y(Y5Y) were cultured in F-12 (Gibco, Rockville, MD, USA) supplemented with 10% of FBS. HEK-APP was generated from HEK293 stably expressing human full-length APP695 as previously described [34 (link)]. HEK-APP cells were cultured in DMEM supplemented with 10% of FBS and 200 mg/mL of G418 (Sigma-Aldrich, St. Louis, MO, USA). Y5Y-APP (SH-SY5Y cells stably expressing human full-length APP695) cells were cultured in F-12 with 10% of FBS and 200 mg/mL of G418 [35 (link)]. All cells were cultured in a humidified incubator at 37 °C and 5% CO2.
The following chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA): lysosomal inhibitor chloroquine (CQ), protease inhibitor MG132, the transcriptional inhibitor actinomycin D (ActD), and the protein biosynthesis inhibitor cycloheximide (CHX). The eIF4E/eIF4G interaction inhibitor 4EGI-1 were from Selleck (Houston, TX, USA). 4EGI-1, MG132, ActD, and CHX were all dissolved in dimethyl sulfoxide (DMSO). The final concentration of DMSO was at least 1:2000. CQ was dissolved in sterilized double-distilled H2O.
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7

Cell Viability Evaluation of Translation Inhibitors

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The cell viability was analyzed using the CellTiter-Fluor™ Cell Viability Assay (Promega), which measures the relative number of viable cells in a population based on the measurement of the conserved and constitutive protease activity within live cells. Briefly, PDGFRα or EGFR cells were seeded in 96 well plates with a density of 0.8 × 104 cells/well and serum starved overnight. Cells were then treated with 10 μg/mL DOX or vehicle control. The translation inhibitors, including 4EGI-1 (Selleckchem), AZD8055 (Selleckchem), and LY2584702 (Selleckchem), were added at indicated concentrations and incubated for 48 hours. The CellTiter-Fluor™ Reagent was then added to wells and viability measured using a fluorometer (400nmEx/505nmEm) after incubation for 30 minutes at 37°C.
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