The largest database of trusted experimental protocols

Hybrid r

Manufactured by GeneAll
Sourced in United States

Hybrid-R is a versatile laboratory equipment designed for nucleic acid extraction and purification. It utilizes a combination of silica-based and magnetic bead-based technologies to efficiently isolate high-quality DNA, RNA, and other nucleic acids from a variety of sample types.

Automatically generated - may contain errors

38 protocols using hybrid r

1

Comprehensive Primate Tissue Transcriptome Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNAs from 13 human and 10 mouse tissues were purchased from Clontech (Clontech, USA). Total RNA was extracted by using Hybrid-R (GeneAll, Republic of Korea) from 14 tissue samples of female crab-eating monkey, provided from the National Primate Research Center, KRIBB, following the manufacturer’s instructions. The Primate Research Institute provided the male western chimpanzee samples, and the female western chimpanzee samples were supported from the Kumamoto sanctuary, Kyoto University to Primate Research Institute in Inuyama, Japan, via GAIN. The experiments handling with western chimpanzee samples was taken at Primate Research Institute. The 11 western chimpanzee male and female tissues were used to extract total RNA using Hybrid-R (GeneAll, Republic of Korea).
The RNA samples quantitated by spectrophotometer, ND-1000 UV–Vis (NanoDrop, USA). The RNA was quantified as 500 ng, and reverse transcribed at the mRNA level using a PrimeScript RT Reagent Kit with gDNA Eraser (TaKaRa, Japan), and the miRNA levels were determined using the HB miR Multi Assay Kit system I (HeimBiotek, Republic of Korea).
+ Open protocol
+ Expand
2

Quantification of ANO2 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from the olfactory epithelium and thalamus of BALB/c mice, as well as from ANO2-EGFP-transfected and untransfected NIH/3T3 cells, using an RNA isolation kit (Hybrid-R, GeneAll, Korea). One microgram of total RNA was used for cDNA synthesis with the SuperScript III First-Strand Synthesis System for RT–PCR (Invitrogen). PCR primers used to confirm expression were as follows: β-actin; F1 primer 5′-TGTGATGGTGGGAATGGGTCAGAA-3′ and R1 primer 5′-TGTGGTGCCAGATCTTCTCCATGT-3′ to produce a 140 bp cDNA; ANO2, F2 primer 5′-AGAGCCTTACACTGGGCTGA-3′ and R2 primer 5′-GTCCCGTTGTGGCTATAGGA-3′ to produce a 321 bp cDNA. PCR conditions were as follows: 5 min at 94 °C for one cycle, and then 35 cycles of 30 s at 94 °C, 30 s at 60 °C, 1 min at 72 °C, followed by 5 min at 72 °C.
+ Open protocol
+ Expand
3

SFTSV RNA Quantification by RT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated by using Hybrid-R™ (GeneAll, Seoul, Korea). The RNA was reverse transcribed using a ReverTra Ace qPCR RT Master Mix (TOYOBO, Osaka, Japan) to generate cDNA. The viral copy numbers were determined by real-time PCR (RT-PCR) with an L segment-based SFTSV-specific primer. The forward primer sequence was SFTSV-L-F: AACATCCTGGACCTTGCATC and the reverse primer sequence was SFTSV-L-R: CAATGTGGCCATCTTCTCCA [17 (link)]. Copy numbers were determined by comparison to a standard control. RT-PCR was performed using CFX96 Real-time PCR (Bio-Rad Laboratories, Hercules, CA) with qPCR SyGreen Mix (PCRbiosystems, Seoul, Korea).
+ Open protocol
+ Expand
4

Quantitative RT-PCR Transcriptional Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted through Hybrid-R (GeneAll, Korea). One microgram of RNA template was reverse-transcribed using a SuperScript III First-Strand Synthesis System (Invitrogen). The qRT-PCR was performed using 100 ng of cDNA solution in a 20 μl reaction mixture containing 10 μl of power SYBR green PCR Master mix (Applied Biosystems, USA), and 1 μl of the forward primer, and 1 μl of the reverse primer. Relative mRNA expression was assessed using the comparative ΔΔCt method. GAPDH was used as an internal standard. The qRT-PCR primers are shown in Table 1.
+ Open protocol
+ Expand
5

Quantitative Analysis of mRNA Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Analysis of mRNA was performed by RT–PCR with StepOne Plus (Applied Biosystems, Carlsbad, CA, USA). Cells were grown to 90% confluence in 60 mm culture dishes, and total RNA was extracted from frozen lung tissues or cells using Hybrid-R™ (GeneAll Biotechnology, Co., Ltd) following the manufacturer's instructions. RNA (0.5 µg/sample) was reverse-transcribed to cDNA with MultiScribe RT of Gold RNA PCR core kit (Gene Amp, Foster City, CA, USA) and 1 µL of cDNA was amplified by RT–PCR using the StepOne Plus detection system and power SYBR green (Applied Biosystems). The primer pairs used to analyse tsp1 were designed to amplify exon 2 and 3 of the tsp1 sequence, which is missing in tsp1−/− mice (F: GGTGTCCTGTTCCTGTTGCA; R: CCGTTATCTCCCCCAGACTCT). Other primers used were: hprt (F: GTTAAGCAGTACAGCCCCAAA; R: AGGGCATATCCAACAACAA ACTT), phd3 (F: TGGACAACCCCAATGGTGAT; R: GCAGGACCCCTCCATGTAACT), β-actin (F: CGATGCCTGAGGCTCTTT; R: TGGATGCCACAGGATTCCA), Kv1.5 (F: CTGGGTCAGCAAGAGCCATT; R: TCAGGCAGAGTCTCCAAGCA), Human hif-1α (F: AGCCGAGGAAGAACTATGAACATAA; R: GTGGCCTGTGCAGTGCAA) and hif-2α (F: CTCATCCCTGCGACCATGA; R: TTCCCAAAACCAGAGCCATT).
+ Open protocol
+ Expand
6

Comprehensive Tissue RNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tissue samples (cerebellum, cerebrum, heart, lung, liver, kidney, spleen, stomach, small intestine, colon, pancreas, bladder, and spinal cord) of crab-eating monkeys (Macaca fascicularis) were provided by the National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB). Total RNA extraction from 13 tissue samples was performed using Hybrid-R™ (GeneAll, Korea), according to the manufacturer’s instructions. The concentration and purity of the total RNA samples were measured using an ND-1000 UV-Vis spectrophotometer (NanoDrop Technologies, USA). To verify the integrity of the total RNA, 18s and 28s RNA bands were confirmed by gel electrophoresis.
+ Open protocol
+ Expand
7

Anti-inflammatory Signaling Pathway Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
LPS, MTT, penicillin/streptomycin, trypsin-EDTA, hematoxylin, eosin, and protease inhibitor were purchased from Sigma-Aldrich (St. Louis, MO, USA). DMEM, FBS, and other cell culture reagents were supplied by Gibco (Carlsbad, CA, USA). DMSO was obtained from Bioshop (Burlington, Ontario, Canada). RNA extraction kit (RiboEx and Hybrid-R) was bought from Gene All (Seoul, Korea). Griess reagent, cDNA synthesis kit (ReverTra Ace qPCR RT Kit), T-PER, and BCA protein assay kit were purchased from Thermo Scientific (Waltham, MA, USA). SYBR Green qPCR Kit obtained from TOYOBO (Tokyo, Japan). Primary antibodies ERK1/2, JNK, p38, COX-2, IκBα, NF-κB, and β-actin were supplied by Cell Signaling (Danvers, MA, USA). Secondary antibody (goat anti-rabbit immunoglobulin g horseradish peroxidase) was provided by Santa Cruz (Dallas, TX, USA). WESTSAVE gold ECL detection kit was obtained from Abfrontire (Seoul, Korea). TBARS assay kit by Cayman (Ann Arbor, MI, USA). ROS-Glo H2O2 assay kit was supplied by Promega (Madison, WI, USA). Zoletil 50 was bought from Virbac (Carros, France).
+ Open protocol
+ Expand
8

RNA Isolation and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was isolated using Ribospin II or Hybrid R (Gene All, Korea). cDNA was converted using ReverTra Ace® qPCR Kit (TOYOBO, Japan) according to the manufacturer’s instructions. TOPreal™ qPCR 2x PreMIX (Enzynomics, Korea) were used for qPCR reaction to determine the gene expression levels of the target genes. Primer sequences for qPCR are shown in Supplementary Table 1.
+ Open protocol
+ Expand
9

Quantifying Gene Expression via qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was isolated using Ribospin II or Hybrid R (Gene All, Seoul, Korea) and converted to cDNA using ReverTra Ace® qPCR Kit (TOYOBO, Osaka, Japan) according to the manufacturer's instructions. To determine the level of gene expression, qPCR was performed using the TOPreal™ qPCR 2X PreMIX (Enzynomics, Korea). Primer sequences for RT‐qPCR are shown in Table S1.
+ Open protocol
+ Expand
10

Quantitative Transcriptional Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolation of RNA was performed using a Trizol-based RNA isolation kit (Hybrid-R) (Gene All, Seoul, Korea). cDNA was synthesized using the Superscript III First-Strand Synthesis System (Takara, Maebashi, Japan). Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis was done using a StepOnePlus Sequence Detection System (Bio-Rad) with SYBR Green PCR Core reagents (Bio-Rad). All experiments were performed in triplicate, each being repeated at least three times. The relative amount of target mRNAs was normalized to GAPDH levels in parallel. Information of the qPCR primers sequence is provided in Supplementary Table S1.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!