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11 protocols using star chromatography workstation software

1

Quantifying Plasma L-Arginine Derivatives

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Plasma levels of L-arginine and its methyl-derivatives asymmetrical dimethylarginine (ADMA) and symmetrical dimethylarginine (SMDA) were measured by high-performance liquid chromatography (HPLC). The samples of standard and plasma extracted a solid-phase-extraction cartridge with SCX50 columns (Varian Inc., Palo Alto, CA, USA). The eluates were derivatized with o-phthaldi-aldehyde (OPA) which was followed by separation via isocratic reversed-phase chromatography on a Symmetry C18 column (150  ×  4.6  mm, 5  μm particle size; Waters Corp., Milford, MA, USA). The potassium-phosphate buffer (50  mM, pH  6.6) containing 12% acetonitrile at a flow rate of 1.1  mL/min was used as the mobile phase. Fluorescence detection was conducted at excitation 340  nm and emission 450  nm wavelengths. The test was performed on a computer controlled by Star Chromatography Workstation software (version 6.3); the device was made by Varian (New York, NY, USA).
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2

HPLC Analysis of Carbohydrates and Organic Acids

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Glucose, fructose, ethanol, glycerol and acetic acid were individually analysed, using a Varian high performance liquid chromatography (HPLC) system, equipped with a Rheodyne injector with a 20 µL loop, a Supelco Gel C—610 H column (300 mm × 7.8 mm) maintained at 35 °C and a refractive index detector RI-4 (Varian, Palo Alto, CA, USA). Isocratic elution was employed with a mobile phase consisting of 0.1% (v/v) phosphoric acid (Panreac, Barcelona, Spain) at a flow rate of 0.5 mL·min−1. Data were recorded and integrated using Star Chromatography Workstation software (Varian). Glucose, fructose, ethanol, glycerol and acetic acid were quantified by external standard calibration.
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3

NMR Spectroscopy and HPLC Analysis

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NMR spectra were obtained at ambient temperature on Varian Unity Inova 400, 500 or 600 MHz instruments (University of Kentucky College of Pharmacy NMR facility) using 99.8% d6-DMSO (Cambridge Isotope Laboratories), as a solvent. Chemical shifts were referenced to internal solvent resonances and are reported in parts per million (ppm) with coupling constants J given in Hz. Analytical TLC was performed on silica gel glass TLC plates (EMD Millipore). Visualization was accomplished with UV light (254 nm) followed by staining with vanillin-sulfuric acid reagent and heating. HPLC was accomplished on an Agilent 1260 HPLC system equipped with a DAD detector (Methods A, B, and C), a Waters 2695 separation module equipped with a Waters 2996 photodiode array detector and a Waters Micromass ZQ (Methods D and E), or a Varian Prostar 210 HPLC system equipped with a photodiode array detector (Methods F and G) HPLC peak areas were integrated with Varian Star Chromatography Workstation Software and the percent conversion calculated as a percent of the total peak area. High resolution electrospray ionization (ESI) mass spectra were recorded on an Exactive Orbitrap mass spectrometer (Thermo Scientific).
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4

Quantification of Mead Compounds by GC-FID

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In a glass tube, 100 µL of an ethanolic solution with 3540 mg·L−1 of internal standard (4-nonanol, Merck, Darmstadt, Germany) was added to 5 mL of mead.
A Chrompack GC CP-9000 gas chromatograph equipped with a split/splitless injector, a flame ionisation detector (FID) and a capillary column CP-Wax 57 CB (50 m × 0.25 mm; 0.2 μm film thickness) was used. The temperatures of the injector and detector were both set to 250 °C, and the split flow was 15 mL min−1. The column temperature was initially held at 60 °C for 5 min, then programmed to rise from 60 °C to 220 °C at 3 °C·min−1 and finally maintained at 220 °C for 10 min. The carrier gas was special helium 4× (Praxair, Danbury, CT, USA) at a flow rate of 1 mL·min−1 (125 kPa at the head of the column). The analysis was performed by the injection of 1 μL of sample. The major compounds in the samples were determined directly by the internal standard (4-nonanol) method, taking into account the relative response of the detector for each analyte, with Star–Chromatography Workstation software, version 6.41 (Varian). The identification was performed by comparing test compound retention times with those of pure standard compounds.
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5

Evaluating Nitric Oxide Regulation Pathways

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Evaluation of LLLT-dependent changes in the nitric oxide availability was analyzed by assessing the PRMT-L-Arg/ADMA-DDAH axis. Plasma levels of L-arginine (a substrate for NO synthase) and its methyl derivatives (asymmetric and symmetric dimethylarginine—ADMA, SMDA, competitive inhibitors of the nitric oxide synthase) were measured by a high-performance liquid chromatography (HPLC). Plasma samples and standards extracted a solid-phase extraction cartridge with SCX50 columns (Varian Inc., USA). Eluates were derivatized with o-phthaldialdehyde (OPA) and separated by isocratic reversed-phase chromatography on a Symmetry C18 column (150 × 4.6 mm, 5 μm particle size; Waters Corp., USA). Potassium phosphate buffer (50 mM, pH 6.6) containing 12% acetonitrile was used as the mobile phase at a flow rate of 1.1 ml/min. Fluorescence detection was performed at the excitation 340 nm and emission 450 nm wavelengths. The test was performed on a computer controlled by Star Chromatography Workstation software (version 6.3); the device was made by Varian (New York, USA).
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6

NMR Spectroscopy and HPLC Analysis

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NMR spectra were obtained at ambient temperature on Varian Unity Inova 400, 500 or 600 MHz instruments (University of Kentucky College of Pharmacy NMR facility) using 99.8% d6-DMSO (Cambridge Isotope Laboratories), as a solvent. Chemical shifts were referenced to internal solvent resonances and are reported in parts per million (ppm) with coupling constants J given in Hz. Analytical TLC was performed on silica gel glass TLC plates (EMD Millipore). Visualization was accomplished with UV light (254 nm) followed by staining with vanillin-sulfuric acid reagent and heating. HPLC was accomplished on an Agilent 1260 HPLC system equipped with a DAD detector (Methods A, B, and C), a Waters 2695 separation module equipped with a Waters 2996 photodiode array detector and a Waters Micromass ZQ (Methods D and E), or a Varian Prostar 210 HPLC system equipped with a photodiode array detector (Methods F and G) HPLC peak areas were integrated with Varian Star Chromatography Workstation Software and the percent conversion calculated as a percent of the total peak area. High resolution electrospray ionization (ESI) mass spectra were recorded on an Exactive Orbitrap mass spectrometer (Thermo Scientific).
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7

HPLC analysis of primary metabolites

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Primary metabolites (glucose, ethanol and acetic acid) were analyzed by a high performance liquid chromatography (HPLC) system composed by a Jasco PU-1580 pump, a Jasco AS-2057 autosampler, a Jasco RI-2031 Plus RI detector and a Knauer K-2501 UV detector at the wavelength of 210 nm. 20 µL of each sample were injected in an Aminex HPX-87H (BioRad) column, maintained at 60 °C, using 5 mmol L -1 H 2 SO 4 as mobile phase. Chromatograms were analyzed using the Star-Chromatography Workstation software (version 6.9.3, Varian), and compounds were quantified against calibration curves prepared from pure standards.
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8

HPLC Analysis of Fermentation Products

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Samples collected during fermentation were analysed by HPLC (Jasco, France) equipped with a refractive index detector (working at 30 °C) and a Prevail Carbohydrate ES 5 μm column (5 μm, 25 × 0.46 cm length × diameter) (Alltech, USA). A mixture of acetonitrile (HPLC Grade, Carlo Erba, France) in pure-water (70:30 v/v), containing 0.04% ammonium hydroxide in water (HPLC Grade, from Sigma, Germany) was used as a mobile phase. Eluent was eluted at a flow-rate of 1 mL.min -1 at room temperature [24] . The chromatographic spectra were analysed using Star Chromatography Workstation software (Varian, USA). FOS standards were acquired from Wako (Chemicals GmbH, Japan), sucrose and fructose from Merck (USA), and glucose from VWR (Belgium).
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9

Fatty Acid Profiling of Lyophilized Milk

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Total fat of milk lyophilized samples was separated by a mixture of hexane isopropane (3/2, v/v), according to Hara and Radin [19] . Transmethylation of fatty acids was performed by the basecatalysed procedure described by Christie [20] and modified by Chouinard et al. [21] . FAME were quantified by Gas Chromatography (GC) using a CP-3380 chromatograph equipped with a split injector, Flame Ionization Detector (FID) and auto sampler CP 8400. A DB23 column (30m x 0.25mm i.d.) with a film thickness of 0.25μm was employed. Nitrogen was used as carrier gas at a flow rate of 30ml/ min. TTemperature'scolumn was held for 1min at 120 °C, then programmed at rate of 10 °C/min to 200 °C and held for 5 °C/min to final temperature of 230 °C; temperature injector and FID were 250 °C and 300 °C, respectively. Integration for each fatty acid was performed by a Varian Star Chromatography Workstation Software. Identification of the peaks was made on the basic of the retention times of standard methyl esters of individual fatty acid (FAME mix C4-C24 #18919-1 AMP). The final concentration of FAME was expressed as mg/100g of milk.
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10

Phenolic Content and HPLC Analysis

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Total phenolic content was determined as previously described by Mamelona et al. using the Folin–Ciocalteu reagent [48 (link)]. The samples were analyzed spectrophotometrically at 760 nm and the results were presented as mg gallic acid equivalent (GAE) per 100 g dry weight (DW) sample (mg GAE/100 g). All samples were reported in triplicates.
Major phenolic compounds were determined by high-performance liquid chromatography (HPLC) analysis applying the method reported by Katsarova [49 ]. HPLC system (Varian Inc., Agilent, Walnut Creek, CA, USA) equipped with ProStar 230 solvent delivery module and Hitachi C18 AQ (250 mm × 4.6 mm, 5 μm) column was used. The system of solvents included deionized water adjusted to pH 3.7 with phosphorus acid and acetonitrile in gradient state. Star Chromatography Workstation software (version 6.30) (Agilent, Walnut Creek, CA, USA) was used for the analyses. Chlorogenic acid and caffeic acid were detected at 360 nm. Results were calculated with standard curves for each analytical standard and expressed as mg/100 g DW.
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