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Perfecta sybr green supermix for iq

Manufactured by Quanta Biosciences
Sourced in United States

PerfeCTa SYBR Green SuperMix for iQ is a pre-formulated reaction mix for quantitative real-time PCR (qPCR) applications. It contains SYBR Green I dye, a DNA-binding fluorescent dye, and all other necessary components for qPCR amplification and detection.

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20 protocols using perfecta sybr green supermix for iq

1

Quantitative Real-Time PCR Analysis

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Total RNA was isolated from tissue samples using TRI Reagent (Sigma-Aldrich, St. Louis, MO), and then converted to cDNA using a High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Thermofisher). Quantitative real-time PCR was conducted using PerfeCTa SYBR Green Supermix for iQ (Quanta Biosciences, Beverly, MA) on a CFX Connect Real-Time PCR Detection System (Bio-Rad, Hercules, CA). Primers used for real-time PCR are listed in Table S1. Ribosomal protein, large, P0 (Rplp0) was used to normalize gene expression.
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2

Quantifying Placental Gene and miRNA Expression

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Embryos and decidua-free placentas (E12.5) were isolated in cold PBS and flash frozen in liquid nitrogen. RNA was isolated using Trizol (Invitrogen) and reverse transcribed using SuperScript II (Quanta Biosciences). Gene expression was measured quantitatively using PerfeCTa SYBR Green SuperMix for iQ (Quanta Biosciences). Primer sets are listed in the table shown below. Differences among target expression were quantified using the ΔΔCT method and normalized to ß-actin and 18S rRNA.
For analysis of miR-126 expression, 10ng of RNA was reverse transcribed using TaqMan MicroRNA Reverse Transcription Kit (Life Technologies #4366596) with RT primers specific for miR-126 (002228) and control snoRNA234 (0001234). Real Time PCR was performed using TaqMan Universal PCR Master Mix (Life Technologies #4324018) and TaqMan probes for miR-126 and control snoRNA234.
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3

Quantifying Gene Expression via RT-qPCR

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Trizol reagent (Invitrogen; Carlsbad, CA) was used to extract total RNA
from GMs according to manufacturer’s instructions. Phenol/chloroform
extraction and ethanol precipitation sequentially followed the extraction.
Contaminating DNA was degraded by two 10 min treatments with DNase I (ProMega;
Madison, WI) and the DNase was subsequently heat inactivated. A
GoScript™ Reverse Transcriptase Kit (ProMega; Madison, WI) was used to
reverse transcribe cDNA using an Eppendorf Mastercycler Personal (Hauppauge,
NY). PerfeCTa SYBR Green Supermix for iQ (Quanta Biosciences, Inc.;
Gaithersberg, MD) was added to the PCR reaction (per manufacturer’s
instructions) and primers (see Table 1) for the gene of interest were added to
the samples (in triplicate) while primers for an appropriate
“housekeeping” gene (the 18S ribosomal subunit) were added to
identical samples (in triplicate). A BioRad MyiQ single Color Real time PCR
Detection System (BioRad; Hercules, CA) was used to detect SYBR Green
fluorescence as a measure of amplicon. Sample CT values were normalized to
(subtracted from) the CT values of the 18S “housekeeping” gene
and the number 2 was raised to a power equal to the difference between the
sample CT values of the 18S subunit and the gene of interest.22 (link),23 (link),25 (link)
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4

Quantitative RT-PCR Analysis of mRNA

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Total RNA was isolated from cells using TRI Reagent (Sigma-Aldrich), followed by reverse transcription using the High Capacity cDNA Archive kit (Applied Biosystems, Foster City, CA) according to the manufacturer’s protocols. PerfeCTa SYBR Green SuperMix for iQ (Quanta Biosciences, Gaithersburg, MD) was used to determine mRNA levels, and analysis was conducted using MyIQ software, in conjunction with a MyIQ-single-color PCR detection system (Bio-Rad Laboratories, Hercules, CA).
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5

Quantifying Inflammatory Cytokine Expression

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RNA was isolated via TRIzol® Reagent according to manufacturer’s instructions. For reverse transcription RevertAid H Minus First Strand cDNA Synthesis Kit from Thermo Scientific, Lithuania (EU) was used. qPCR was performed using the iQ5 real-time PCR detection system (Biorad), the PerfeCTa® SYBR Green SuperMix for iQ (Quanta Biosciences, Gaithersburg, USA) and the following primers: forward-IL-8∶5′-AGC TCT GTG TGA AGG TGC AG-3′, revers-IL-8∶5′-CTC TGC ACC CAG TTT TCC TT-3′; forward-TNFα: 5′-GCC CAG GCA GTC AGA TCA T-3′, reverse-TNFα: 5′- GCT GGT TAT CTC TCA GCT CCA-3′; forward-RPLP0∶5′-GCA ATG TTG CCA GTG TCT G-3′, reverse-RPLP0∶5′-GCC TTG ACC TTT TCA GCA A-3′. Data obtained were analysed with Bio Rad iQ5 Optical System Software version 2.0. The reference gene ribosomal protein, large, P0 (RPLP0) served for standardization of the individual PCRs. All assays were performed in duplicate.
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6

RNA Isolation and qPCR Analysis

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Total RNA was isolated using TRI Reagent (Sigma-Aldrich, St. Louis, MO), and cDNA was synthesized using a high capacity cDNA reverse transcription kit (Applied Biosystems). Quantitative real-time PCR was performed using PerfeCTa SYBR Green Supermix for iQ (Quanta Biosciences, Beverly, MA, USA) on a CFX Connect Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). Primers used for real-time PCR are listed in Table 1.
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7

qPCR Protocol for Gene Expression

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qPCR was performed using cDNA with a final concentration of 1/100 of the reverse transcription product. Genomic DNA was diluted 1/4. Primers were used at a final concentration of 250 nM along with PerfeCTa SYBR Green SuperMix for iQ (Quanta Biosciences) using the manufacturer’s recommended dilution. Reactions were run in a 20 μL reaction volume in 96 well format in a MyIQ cycler (BioRad) with the following conditions: 95°C for 10 mins, 45 cycles of 95°C for 10 sec and 55°C for 60 sec, followed by a melt curve.
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8

Real-time qPCR Analysis of Targets

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Real-time quantitative PCR was performed as previously described.22 (link) PerfeCTa™ SYBR® Green SuperMix for iQ (Quanta Biosciences, Gaithersburg, MD) was used and analysis was conducted using MyIQ software (Bio-Rad Laboratories, Hercules, CA). The PCR primers utilized are listed in Supplementary Table 2.
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9

Quantitative Real-Time PCR Protocol

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For qRT-PCR, messenger RNA isolation and subsequent complementary DNA synthesis were performed using μMACS One-step cDNA kit (Miltenyi Biotec, Cat. No. 130–091–902), according to the manufacturer’s instructions. Reactions were performed with PerfeCTa SYBR Green SuperMix for IQ (Quanta Biosciences, Cat. No. 95053) on a BioRad IQ5 Instrument (Biorad). Reactions were performed at least in triplicates and specificity of the amplified products was determined by melting peak analysis. Quantification for each gene of interest was performed with the 2−ΔΔCt method. Quantified values were normalized against the housekeeping gene GAPDH. PCR primers were purchased from Qiagen (QuantiTect Primer Assays, Qiagen) are listed here. The primers used in this study are listed in Supplementary Table 2.
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10

Quantitative RT-PCR Analysis of Notch3 and PDGFR-β

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Isolation of mRNA and reverse transcription into cDNA were performed using the µMACS One Step cDNA kit (Miltenyi Biotec). We utilized pre-designed primer assays (QuantiTect Primer Assay, Qiagen) which contain a lyophilized mix of forward and reverse primers corresponding to the genes of interest (Notch3, PDGFR-β). qPCR analysis was then performed using PerfeCTa SYBR Green SuperMix for iQ (Quanta Biosciences) and gene expression was measured by real-time PCR using iCycler iQ Real-Time PCR detection system (Bio-Rad).
Real-time PCR results obtained were calculated via relative quantification using gene expression levels in oil groups as a reference. The expression level of Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was utilized as an internal control. Statistical analyses of results were performed using the Student’s t-test.
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