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9 protocols using duetta

1

Fluorescence Spectroscopy of Tryptophan

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The samples were dissolved or dispersed in ultra-pure water to 0.02 wt% and measured using a fluorospectrometer (Duetta, Horiba, Kyoto, Japan). The supplied software (EzSpec) was used for analysis. Sample solutions were placed into quartz cuvettes with an optical path length of 1 cm. Measurements were taken with stirring at 1000 rpm. The excitation wavelength was set at 280 nm for tryptophan quenching. Emission spectra were recorded in the range between 300 and 400 nm. Excitation and emission slits were set at 5 nm. All spectra were the average of at least three repeated scans.
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2

Morphological and Spectroscopic Analysis of Au Nanoparticles in HepG2 Cells

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The morphologies of the HepG2 cells were observed by SEM (Hitachi, Japan). The morphologies of the Au nanoparticles were measured by TEM (JEM-2100F, JEOL). The FL, FT-IR, XPS and UV-vis absorption spectra of Au nanoparticles were obtained by a fluorescence spectrometer (Duetta, HORIBA), Fourier transform infrared spectrometer (Nicolet iS5, Thermo Fisher Scientific), x-ray photoelectron spectrometer (ESCALAB 250, Thermo Fisher Scientific), and UV-vis spectrophotometer (UV6100, MAPADA). The dark-field image and fluorescence image of HepG2 cell were measured by CLSM (A1R HD25, Nikon). The images of pathological sections were captured using a fluorescence microscope (Axio Imager 2, ZEISS). The element content of HepG2 cell was investigated with inductively coupled plasma mass spectrometer (Ultima Expert LT, HORIBA). The microplate reader (Multiskan, Thermo Fisher Scientific) was used to measure cell viability. Gel imaging system is used for Western blot image (E-Gel Imager, Thermo Fisher Scientific). The NMR spectra of auranofin before and after treatment were tested by an NMR spectrometer (Avance 500 MHz, Bruker).
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3

Fluorescent Labeling of NUP98 FG Domain

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For labelling, the purified NUP98 FG domain with single or double cysteine mutations was exchanged to 4 M GdmCl, 1× PBS, 0.1 mM EDTA and 0.2 mM TCEP, pH 7. Labelling with Alexa Fluor 594 maleimide (A10256, Thermo Fisher) and LD655-maleimide (Lumidyne Technologies) was done at the molar ratio of 1:2 (dye:protein) overnight at 4 °C. The reaction was quenched with 10 mM DTT in 4 M GdmCl and 1× PBS, pH 7. Unreacted dye was washed off using a 3-kDa MWCO centrifugal filter, and the labelled protein was further purified with Superdex 200. Pure fractions were chosen, pooled and concentrated as described above, and the final concentration was measured by the absorbance spectrometer Duetta (Horiba). The proteins were flash-frozen and stored at −80 °C.
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4

UV-Vis Spectroscopy of Aqueous Samples

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The UV–Vis spectrums of the aqueous sample solutions (15 µg/mL) were scanned by a UV–Vis absorption and fluorescence spectrometer in one (Duetta, HORIBA, Japan) from 200–600 nm.
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5

Characterization of Perovskite Quantum Dots

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TEM images were acquired using a Tecnai G2 F20 X-Twin microscope (FEI Korea, Hillsboro, OR, USA). XRD was performed using a D8 Advance diffractometer (Bruker, Billerica, MA, USA). An X-ray diffractometer equipped with a Cu Kα radiation source was employed in the 2θ range of 10–80° at 0.05 deg/step and 0.5 sec/step. In situ UV-Vis. absorption and photoluminescence spectroscopies were performed using an IPCE-based homemade optical setup (IPCE-CCD) with Duetta (HORIBA Scientific, Kyoto, Japan) as a charge-coupled device (CCD) detector. We used a 380 nm excitation light to excite the PQDs to prevent the occurrence of overtones up to 800 nm and to obtain pristine PL spectra of the PQDs.
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6

Spectroscopic Analysis of sfGFP-Y66 Variants

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sfGFP-Y66 variants were diluted to final concentrations of 0.5 mg/mL in PBS at pH 7.4. Spectra were collected using Duetta (Horiba) with 3 mm quartz cuvettes at 25°C. The scanning wavelength of absorption spectra started from 250 to 700 nm with 5 nm intervals. The emission spectra of sfGFP-Y66 and wild-type variants were recorded from 380 to 750 and from 500 to 750 nm, respectively, with 5 nm intervals.
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7

Comprehensive Characterization of Nanohybrids

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Unless otherwise stated, all reagents were purchased from commercial suppliers and used without further purification. 1H NMR and 13C NMR spectra were measured on a Bruker AMX-400 NMR spectrometer and Bruker Ascend 600 NMR spectrometer, using TMS as an internal standard. High resolution mass spectrometric (HRMS) analyses were carried out in a HP 1100 LC-MS spectrometer. UV–visible spectra and fluorescence spectra were measured on a Horiba Duetta. Deionized water was purified using a Millipore Milli-Q A10 super-water system. The size distribution and zeta potential of nanohybrid were measured by dynamic light scattering (DLS) detector (Zetasizer Nano-ZS90, Malvern Instruments Ltd, UK). The morphology of nanoparticles was photographed by high resolution transmission electron microscope (JEM-2100, Japan) and field emission scanning electron microscope (S-4800, Japan). Pore size distribution and pore volume were obtained by the Surface Area and Porosimetry System (ASAP2010 N, USA). Fluorescence images were collected on an A1R confocal laser scanning microscope (CLSM, Nikon, Japan).
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8

Comprehensive Material Characterization

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UV-visible spectra and PL spectra were recorded using a Duetta, Horiba Scientific instrument at room temperature. The PL lifetime measurements were carried out using a FluoroMax Plus spectrofluorometer, Horiba Scientific at room temperature with excitation at 369 nm. XRD was performed on benchtop X-ray powder diffractometer (Bruker) using Cu-Kα radiation (λ = 0.154184 nm). Raman spectra were measured using a Horiba instrument at room temperature using the laser wavelength and spot size of 532 nm and ∼1 μm, respectively. XPS was measured by Axis Supra, Kratos under the base pressure of ∼2 × 10−9 Torr. Transmission electron microscopy (TEM) images were acquired using a Hitachi HT7800, operating at an accelerating voltage of 80 kV. FTIR spectroscopy was carried out using a Shimadzu IRTracer-100 at room temperature.
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9

Comprehensive Characterization of Nanomaterials

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Produced nanomaterials
are characterized via multiple techniques.
Absorption characteristics were analyzed via UV–vis spectroscopy.
The spectra of final particles are measured in a 10 mm—Helma
cell by using the PerkinElmer LAMBDA 25 Series UV–vis spectrophotometer.
The obtained data are analyzed with UV WinLab software. Morphological
characterization of the nanoparticles is realized via transmission
electron microscopy (TEM). The observations are carried out by a JEOL
JEM 2100 Plus microscope equipped with a Gatan US4000 CCD camera operating
at 200 kV. The size distribution of nanoparticles was monitored using
DLS. The analysis is carried out using a Zetasizer (Malvern Instruments)
at 25 °C. The volume size distribution and the polydispersity
index were obtained from the autocorrelation function using the general-purpose
mode for all analytes. The fluorescence spectroscopy analysis is realized
via a HORIBA DUETTA absorption and fluorescence spectrophotometer
at variable excitation wavelengths. The spectra are collected within
the range of 365–600 nm.
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