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21 protocols using facs canto 1 flow cytometer

1

ROS Production in H. capsulatum Treated with Compounds

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The intracellular production of ROS after treatment of H. capsulatum (EH-315) with the MIC90 concentrations of the compounds 7 (0.122 µg/mL), 11 (0.24 µg/mL), and 32 (3.90 µg/mL) was evaluated using 50 µM of H2DCFDA (2′,7′-dichlorodihydrofluorescein diacetate, Invitrogen- Thermo-Fisher-Scientific, Waltham, MA, USA). As a control, treatments with AmB (0.06 µg/mL), ITZ (0.125 µg/mL) and hydrogen peroxide (10 mM–H2O2) were used. The treatment was carried out as described in Section 2.5.1. After the incubation time (4 h), the samples were washed, and 500 µL of PBS was added, transferred to the cytometer tubes. Then, 1.5 µL of the H2DCFDA solution was added, incubated at RT, and protected from light for 10 min [62 (link),63 (link),64 (link)]. The samples were analyzed on a BD FACS Canto I flow cytometer localized at the Laboratory of Proteomics/Clinical Mycology, Faculty of Pharmaceutical Sciences, UNESP-Araraquara, Brazil.
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2

Cell Cycle Analysis of Drug-Treated Cells

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Cells plated in 6-well plates were treated with flavopiridol, carfilzomib, the combination, or vehicle for 24–60 hours, depending on the cell line. Cells were trypsinized and fixed for 30 minutes in 70% ethanol at 4°C and stained with 50 mg/mL of propidium iodide containing 100 mg/mL of ribonuclease A. Flow cytometry was performed on a BD FACSCanto I flow cytometer (BD Biosciences, San Jose, CA) using CellQuest software (BD Biosciences, San Jose, CA). Data were generated for at least 20,000 events per sample and analyzed using FlowJo® version 10.2 software (FlowJo, LLC, Ashland, OR).
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3

Intracellular ROS Measurement in T. rubrum

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Intracellular ROS production after treating T. rubrum ATCC 28189 with 2-chalcone in the dark and 2-chalcone mediated PDT was evaluated using 50 µM H2DCFDA (2.7 dichlorodihydrofluorescein diacetate, Invitrogen) as described by Singulani et al. (2019) (link). This compound is converted to a highly fluorescent 2ʹ, 7ʹ-dichlorofluorescein (DCF) compound after cleavage of its acetate group by intracellular esterases and this compound binds to ROS. As controls, AMB and FLZ treatments were used. The treatment was performed as described apoptosis/necrosis assay section. After the incubation period, the samples were washed, following suspension in 500 µL of PBS, and transferred to cytometer tubes. Then, 1.5 µL of the H2DCFDA solution was added with subsequent incubation at 25°C in the dark for 10 minutes. The samples were analyzed on a BD FACS Canto I flow cytometer.
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4

Apoptosis Evaluation of Cancer Cell Lines

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SW-13 and NCI-H295R cells were treated in 6-well plates with flavopiridol, carfilzomib, the combination, or vehicle for 24 and 48 hours, respectively. Cells were washed, resuspended in Annexin V binding buffer, and stained with FITC Annexin V per the manufacturer's protocol (#640914, BioLegend, San Diego, CA). Propidium iodine and FxCycle Violet (#F10347, Thermo Fisher Scientific, Waltham, MA) were used to stain late apoptotic and necrotic cells. Flow cytometry was performed on a BD FACSCanto I flow cytometer (BD Biosciences, San Jose, CA) using CellQuest software (BD Biosciences, San Jose, CA). Data were generated for at least 20,000 events per sample and analyzed using FlowJo® version 10.2 software (FlowJo, LLC, Ashland, OR).
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5

Fungal Apoptosis Assay with Antifungals

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The Annexin V-FITC apoptosis detection kit (A9210; Sigma-Aldrich) was used according to the manufacturer’s recommendations. To this, 1.5 mL of the fungal suspension at a final concentration of 1 × 106 cells/mL was treated with nonyl (7.8 mg/L), amphothericin B (4 mg/L), or fluconazole (256 mg/L). The samples were analyzed using a BD FACSCanto I flow cytometer.
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6

Macrophage Phagocytosis Assay with Anti-CRIg Antibodies

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Briefly, 1 × 106 macrophages in HBSS with 8% human AB serum, were incubated with 80 µg pHrodo™ Red S. aureus Bioparticles™ (Invitrogen), in a final volume of 400 µL in 12 × 75 mm round-bottom tubes18 (link). These were gassed with 5% CO2/air and capped, with incubation at 37 °C for 1 h. Following washing in HBSS, samples were acquired using a BD FACSCanto I flow cytometer with FACSDiva 8.0, with analysis using FlowJo 10.1 software (FlowJo LLC) to determine bioparticle uptake by changes in median fluorescence intensity in the PE channel. For experiments run in the presence of the anti-CRIg blocking antibody, 1 × 106 macrophages were incubated at room temperature with either 10 μg/mL mouse anti-human CRIg monoclonal antibodies (clone 6H8, Santa Cruz Biotechnology; clone 6C9, Genentech) or mouse IgG1 isotype control antibodies for 15 min prior to conducting the phagocytosis assay as above.
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7

Mitochondrial Superoxide Quantification

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Mitochondrial superoxide anion production was measured using MitoSOX™ Red probe (Invitrogen). Following oxidative stress sequence, AC16 cells were incubated with 5 µM MitoSOX™ Red in FBS-free DMEM for 10 min. Mean fluorescence intensity (MFI) was then analysed with a BD™ FACSCanto™ I flow cytometer (BD™ Biosciences).
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8

Necrosis-Apoptosis Assay for Antifungal Compounds

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For the necrosis–apoptosis assay, the treatment was carried out as described in Section 2.5.3. The compounds 7, 11, and 32 were tested, and the drugs AmB and ITZ were used as controls. As markers, the apoptosis detection kit (Sigma-Aldrich Milano, Italy, A9210) was used following the manufacturer’s guidelines. The samples were incubated for 2 h at 37 °C protected from light. After the incubation time, the samples were centrifuged and washed with 1× PBS, and the cells were resuspended in 500 µL of kit buffer and later transferred to cytometer tubes. Analyses were accomplished on a BD FACS Canto I flow cytometer localized at the Laboratory of Proteomics/Clinical Mycology, Faculty of Pharmaceutical Sciences, UNESP-Araraquara, Brazil.
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9

Antifungal Treatments Impact on T. rubrum

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The death mechanism in T. rubrum ATCC 28189 was studied after treatment with 2-chalcone in the dark, 2-chalcone-mediated PDT, AMB, and FLZ. Inocula were prepared and adjusted to a final concentration of 1 × 106 cells/mL in a volume of 1.5 mL. The cells were treated with the same volume of compounds and AMB at a concentration of 4x MIC. FLZ treatment was performed at a concentration of 256 mg/L (as this strain was found to be resistant to FLZ). Cell death was evaluated using the Annexin V-FITC apoptosis detection kit (Sigma-Aldrich, A9210) following the manufacturer’s guidelines. The samples were analyzed on a BD FACS Canto I flow cytometer located at the Clinical Mycology Laboratory at the School of Pharmaceutical Sciences, UNESP-Araraquara, Brazil.
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10

Multiparametric Flow Cytometry Analysis

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Digested cells were suspended and washed with PBS containing 5% FBS to make a single‐cell suspension. GFP‐positive populations were enriched by using a FACSCalibur flow cytometry system (BD Bioscience) with FlowJo software. Flow cytometry assays were performed by using a BD FACSCanto I flow cytometer (BD Bioscience). Antibodies used were: APC rabbit anti‐CK5 (ab224984, Abcam, 1:5000), PE mouse anti‐CK10 (NBP2‐34752PE, Novus, 1: 500), PE mouse anti‐α‐SMA (NBP2‐34522PE, Novus, 1:100), PE rabbit Anti‐CK18 (ab210410, Abcam, 1:200), Alexa Fluor 647 rabbit anti‐AQP5 (ab215225, Abcam, 1:100), APC rabbit anti‐CD49f (313 615, Biolegend, 1:1000), and PE mouse anti‐CD29 (303 003, Biolegend, 1:1000). Gating was performed on single‐stained controls and unstained controls.
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