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6 protocols using anti mouse f4 80 microbeads

1

Isolation and Polarization of Bone Marrow-Derived Macrophages

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NSE-BMP4 mice were sacrificed, and the hindlimbs were harvested to isolate the long bones (including the femur and tibia) in a biosafety hood. PBS injected with a syringe and needle was used to flush out the bone marrow from the femur and tibia. Red blood cells in the flushed bone marrow were lysed with RBC lysis buffer (NH4Cl (8.99 g·L−1) + KHCO3 (1 g·L−1) + Na4-EDTA (0.037 g·L−1)). F4/80+ macrophages were sorted using a MACS kit containing anti-mouse F4/80 microbeads (130-110-443, Miltenyi) according to the manufacturer’s instructions before the cells were cultured in RPMI-1640 with 10% serum replacement (10828028, Gibco) and 1% penicillin/streptomycin (MRC). Recombinant mouse M-CSF (50 ng·mL−1, Life Technologies)/GM-CSF (50 ng·mL−1, Thermo) was used for macrophage polarization. A recombinant mouse FetA protein (10 ng·mL−1, R&D) was added to GM-CSF to test whether FetA can change the polarization of macrophages. F4/80+ macrophages were further analyzed by flow cytometry using an anti-CD206 antibody diluted with flow cytometry buffer (0.5% BSA + 0.09% sodium azide in PBS) (see Fig. S21). Flow cytometry data were analyzed with FlowJo software (TreeStar, Inc.) or CytExpert (4.0 version, Beckman).
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2

Tumor Immune Cell Isolation and Analysis

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Single-cell suspensions of tumors were incubated with anti-mouse F4/80 microbeads (Miltenyi Biotec) and passed through two sequential LS columns per 3×107 cells, saving the final F4/80+ fraction, as per the manufacturer’s protocol, and were used immediately in cell culture experiments or pelleted, flash frozen, and stored at −80°C for use in subsequent mRNA analysis and western blotting. Kit+ tumor cell selection was performed by incubating single-cell suspensions of tumor cells with anti-human CD45 microbeads (Miltenyi Biotec) and collecting the negative fraction. The CD45 fraction was then incubated with CD117 microbeads (Miltenyi Biotec), and the positive fraction was collected. Cells were pelleted, flash frozen, and stored at −80°C for use in subsequent western blotting. Purity was >90% by flow cytometry.
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3

Isolation and treatment of hepatic stellate cells

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As described previously5 (link),23 (link), hepatic stellate cells (HSCs) were isolated by in situ collagenase perfusion of the liver. After anesthesia by intraperitoneal injection with 100–200 mg/kg ketamine/xylazine cocktails, the liver was perfused in situ with collagenase type I through the portal vein. Non-parenchymal cells were separated by centrifugation at 500 rpm and 4 °C for 5 minutes. Then, the HSCs and Kupffer cells were isolated by differential centrifugation on a density gradient of 11.5% and 20% OptiPrep (Sigma-Aldrich, MO, USA) at 3,000 rpm and 4 °C for 17 minutes. HSCs and Kupffer cells were located in the upper and lower layers, respectively. Kupffer cells were positively purified by labeling with anti-mouse F4/80 microbeads (Miltenyi Biotec) and subjected to real-time PCR analysis. HSCs and Kupffer cells were treated with alcohol (50–200 mM), lipopolysaccharide (10 ng/mL; Sigma-Aldrich, MO, USA), or recombinant GDF15 (100 ng/mL; R&D Systems, Minneapolis, MN, USA).
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4

Isolation of Colonic Lamina Propria Macrophages

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Mouse colon was cut into 0.5 cm pieces and incubated for 30 min at 37 °C in calcium- and magnesium-free Dulbecco and Phosphate-Buffered Saline (DPBS; Thermo Fisher Scientific) supplemented with 1 mM EDTA. Gentle stirring was applied to remove intestinal epithelial cells and the supernatant was discarded. The remaining colonic fragments were incubated in RPMI medium containing 1 mg/ml Collagenase D (Roche Life Science), 100 μg/ml DNase I (Roche Life Science), and 2% FBS. Gentle stirring was applied for 60 min at 37 °C. After centrifuge the supernatant was discarded, the wash repeated, and the remaining cells were filtered through a 40 μm Nylon strainer (BD Biosciences) to obtain a single cell suspension of cLPs. To isolate colonic macrophages, cLPs were stained with anti-mouse F4/80 Microbeads (Miltenyl Biotec). F4/80+ macrophages were isolated from cLPs using an AutoMACS Pro Separator system (Miltenyl Biotec).
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5

Tumor Cell and TAM Isolation

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Tumor single-cell suspensions were incubated with anti-mouse CD45 microbeads (Miltenyi Biotec) and run through two sequential LS columns per 3 × 107 cells, saving the positive fraction. Kit+ tumor cell selection was performed by incubating the CD45 fraction with CD117 microbeads (Miltenyi Biotec) and collecting the positive fraction. CD45Kit cells were collected from the remaining negative fraction. For TAM isolation, single-cell suspensions were incubated with anti-mouse F4/80 microbeads (Miltenyi Biotec) and run through two sequential LS columns per 3 × 107 cells. Purity was >90% by flow cytometry.
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6

Isolation of Peritoneal Macrophages and Neutrophils

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To maximize the yield of peritoneal macrophages, each mouse was injected intraperitoneally with 1 ml of 2.4% thioglycollate 3 days before macrophage harvest. For harvesting, 5 ml PBS was injected into the peritoneum of each euthanized mouse and peritoneal elicited cells (PECs) were collected. After removing red blood cells by ACK buffer treatment, PECs were stained with anti-mouse F4/80 Microbeads (Miltenyl Biotec). F4/80+ macrophages were isolated from PECs using an AutoMACS Pro Separator system (Miltenyl Biotec). Isolated F4/80+ macrophages were suspended in PBS and keep on ice for further injection. To obtained peritoneal neutrophils for co-incubation experiments, each mouse was injected intraperitoneally with 1 ml of 2.4% thioglycollate 24 h before neutrophils harvest. For harvesting, 5 ml PBS was injected into the peritoneum of each euthanized mouse and PECs were collected. After removing red blood cells by ACK buffer treatment, PECs were stained with anti-mouse Ly6G Microbeads (Miltenyl Biotec). Ly6G+ neutrophils were isolated from PECs using an AutoMACS Pro Separator system (Miltenyl Biotec).
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