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Ampicillin

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Ampicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum penicillin-based medication that functions by interfering with the synthesis of bacterial cell walls, thereby inhibiting the growth and reproduction of various bacterial strains.

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5 protocols using ampicillin

1

Antibiotic Susceptibility Screening Protocol

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For general tests with kanamycin, tetracycline (tetracycline hydrochloride, Zymo Research, Irvine, CA, USA), chloramphenicol, hygromycin B (Invitrogen, Carlsbad, CA, USA), gentamicin, polymyxin B sulfate, ampicillin, penicillin G (penicillin G sodium salt), and carbenicillin (Bioline, London, UK), we used gradient antibiotic plates (Szybalski and Bryson, 1952 (link)). For the determination of minimal inhibitory concentrations (MICs) for ampicillin, penicillin G, and carbenicillin broth macrodilution method was used.
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2

Plasmid DNA Extraction from E. coli

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E. coli transformed with pUC18 was
inoculated onto a plate of LB-agar medium (Luria–Bertani) (Applichem,
Darmstadt, Germany) supplemented with ampicillin (100 μg/mL)
(Bioline, London, UK) and incubated for 24 h at 37 °C. Then,
the E. coli cells were inoculated in
liquid LB medium, supplemented with ampicillin (100 μg/mL) for
24 h at 37 °C. After incubation, the plasmid DNA (pDNA) was extracted
by using the Kit NZYSpeedy Miniprep, following the
instructions provided by the manufacturer.
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3

Compound TS262 DNA Cleavage Assay

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The interactions between DNA binding assays were conducted to determine if compound TS262 was able to cleave plasmid DNA. Plasmid DNA (pDNA) was obtained from E. coli transformed cells, and grown overnight (o.n.) in LB liquid medium (Applichem, Darmstadt, Germany) with 100 μg mL−1 ampicillin (Bioline, London, UK) at 37 °C with stirring. Plasmid extractions were performed using the Invisorb Spin Plasmid Mini Two Kit (Invitek, Berlin, Germany) and DNA were quantified by spectrophotometry with NanoDrop 2000 (Thermo Scientific, Waltham, MA, USA). The interactions between TS262 and pBluescript II SK(+) (pBSKII) DNA (Agilent Technologies, Santa Clara, CA, USA) were determined as previously described [13 (link)]. For the concentration-dependent studies, we incubated pBSK II (200 ng in a final volume of 20 µL) in the presence (25–100 µM) or absence of the tested compound for 24 h at 37 °C in reaction buffer (5 mM Tris-HCl, 50 mM NaCl (pH 7.02)).
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4

Enzymatic DNA Manipulation and Purification

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BamHI-HF, XhoI, T4 DNA ligase and DNA polymerase were obtained from New England Biolabs (USA). Unstained Protein Ladder, Monarch ® Plasmid Miniprep Kit and Monarch ® DNA Gel Extraction Kit were also purchased from New England Biolabs (USA). Agar, peptone, yeast extract, sodium chloride, ampicillin and IPTG were obtained from Bioline (UK). All chemicals used in SDS-PAGE were purchased from Merck (Germany). Fructosyl valine (FV) was prepared as previously described (Keil, Mortensen, & Christophersen, 1985; (link)Rajkumar, Warsinke, Möhwald, Scheller, & Katterle, 2007) (link). Sodium hydroxide, sodium acetate, valine, and glucose were purchased from Sigma-Aldrich.
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5

CRISPR Activation Library Cloning

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Single guide RNA (sgRNA) sequences for non-targeting control and ACE2 were taken from the Weissman Human Genome-wide CRISPRa-v2 library (Addgene #83978). LRRC15 sgRNA sequences and additional ACE2 sgRNA sequences were taken from the Human CRISPR activation pooled library set A (Addgene #92379). Sense and antisense strands for each sequence were ordered as DNA oligonucleotides (IDT) with 5' overhangs of 5'-CACC-3' on the sense strand oligonucleotide and 5'-AAAC-3' on the antisense strand oligonucleotide. Oligonucleotides were annealed at 4°C for 16 h and pXPR-502 (Addgene #96923) was digested with Esp3I (ThermoFisher Scientific, ER0451) or BsmBI-v2 (New England Biolabs). sgRNA DNA oligonucleotide duplexes were ligated into the digested pXPR-502 backbone using T4 ligase (New England Biolabs) and incubated at 4°C overnight. NEB 10-beta competent E. coli (New England Biolabs) were transformed with 100 ng of each sgRNA construct by heat-shock, plated onto LBagar plates (Life Technologies) containing ampicillin (Sigma-Aldrich) and grown at 37°C. Individual colonies were picked, expanded in Luria broth (Life Technologies) supplemented with ampicillin and amplified constructs were harvested using either ISOLATE II Plasmid Mini Kit (Bioline) or PureYield Plasmid Maxiprep System (Promega Corporation).
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