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7 protocols using p2ry12

1

Multiparameter flow cytometry analysis of immune cell subsets

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All antibodies used at 1:200: CD11b (Clone M1/70, Biolegend, Cat 10137), CD45 (Clone 30‐F11, eBioscience, Cat 56–0451–82), MHCII (Clone M5/114.15.2, Biolegend, Cat 107626), CD80 (Clone 16‐10A1, Biolegend, Cat 104706), CD103 (Clone 2E7, eBioscience, Cat 48‐1031‐80), CD8a (Clone 53‐6.7, Biolegend, Cat 100712), CD4 (Clone RM4‐5, BD Biosciences, Cat 550954), CD44 (Clone IM7, Biolegend Cat 103011), P2RY12 (Clone S16007D, Biolegend Cat 848006), IFNγ (Clone XMG1.2, Biolegend Cat 505826), CD68 (Clone FA‐11, Biolegend Cat 137017). WNV‐specific CD8+ T cells were identified with fluorescent‐labeled immunodominant Db‐restricted NS4B peptide.
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2

Retinal Microglia Immunofluorescence Characterization

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After isolating on the first day, a small part of mixed retinal cells was seeded at a density of 1 × 106 cells per well in a 24-well plate with poly-L-lysine-coated glass coverslips at the bottom. For cultured retinal microglia, we cultured them after shaking on day 17 at a density of 2 × 105 cells per well onto poly-L-lysine-coated glass coverslips in a 24-well plate. After attachment to the coverslips, cells were deprived of medium and fixed with 4% PFA for 1 h. Then, 0.1% Triton was used for permeabilization for 20 min. Then, 5% bovine serum albumin (BSA, Sigma) was performed as a blocking buffer. Primary antibodies of anti-ionized calcium-binding adaptor molecule 1 (Iba1, Abcam, #ab178846, 1:200) and anti-Purinergic Receptor P2Y12 (P2RY12, Biolegend, #848001, 1:100) were used to stain the microglia-related marker at 4°C overnight. Primary antibodies were incubated at 4°C overnight. The next day, coverslips or tissue sections were incubated with secondary antibodies (Alexa Fluor 488 of goat anti-mouse, Yeasen, 1:1,000; Alexa Fluor 647 of goat anti-rabbit, Yeasen, 1:1,000) at room temperature for 1 h. DAPI (Abcam, #ab228549, 1:1,000) was used for staining nuclear DNA. The morphology of retinal microglia and their specific locations in retina layers were observed under immunofluorescence microscopy (Leica) equipped with the NIS-Elements Advanced Research software.
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3

Multimarker Immunofluorescence Assay for Microglia

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A total of 1 × 104 cells were seeded into an 8-well chamber for 24 h. Then, cells were permeabilized with pure methanol for 10 min on ice, followed with 1% bovine serum albumin blocking buffer for 1 h at room temperature. Anti CD11b (BD Pharmingen, CA), IBA1 (WAKO, Japan), P2RY12 (BioLegend, CA), and CD68 (CST, MA) antibodies were incubated with cells in the blocking buffer overnight at 4 °C. Next, Alexa fluorescence 594 goat anti-rabbit was used for 1 h at room temperature, followed by ProLong® Gold Antifade Mountant. Images were acquired with Zeiss LSM confocal 710.
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4

Immunohistochemical Analysis of 3D Spheroid Cocultures

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The 3D spheroid cocultures were kept in 4% paraformaldehyde at 4 °C for 30 min. The specimens were then processed, embedded in paraffin and sectioned at 5 μm, essentially as we did before [60 (link), 61 (link)]. Heat-induced antigen retrieval was performed in citrate buffer using a pressure cooker. Sections were incubated with primary antibodies overnight at 4 °C. Primary antibodies used in this study were P2RY12 (BioLegend, CA) and Nestin (Rat401, DSHB) as we used in previous studies. Sections were then incubated with FITC- or TRICT-conjugated IgG (for 1 h at room temperature), followed by DAPI staining (Vector Laboratories). Images were acquired with Olympus BX41 microscope. Six random fields from three different tissues in each group were quantified using the ImageJ software.
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5

Perfused Mouse Tissue Preparation for IHC

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Mice were perfused with 4% PFA and drop fixed overnight before being transferred to 20% sucrose, followed by 30% sucrose once the tissue had sunk. Then tissue was sectioned on a cryostat in 30 μm thickness prior to implementing IHC. Antibodies for GFP (1:1000, Invitrogen or 1:500, Aves), IBA1 (1:500, Abcam), IBA1 (1:1000, Wako), P2RY12 (1:500, Biolegend), TMEM119 (1:2000, GeneTex), GFAP (1:1000, Sigma), NEUN (1:1000, Biolegend), CD68 (1:4000, BioRad), and pSMAD3 (1:150, Abcam) were used. Tissue was blocked for 1 hour at room temperature (RT) in 4%BSA/0.3% Triton-X100, then incubated overnight at 4C in primary antibody. Tissue was then incubated for 2–3 hours in appropriate secondary antibodies conjugated with Alexa fluorescence 488, 555, 647, or 790.
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6

Isolation and Characterization of Myeloid Cells

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Myeloid cells were isolated from hemibrains as previously described (77 (link)) and incubated with anti-mouse CD16/32 followed by labeling with conjugated antibodies or dye. The following were used: CD11c (BD Horizon, clone: N418), CD11b (BioLegend,clone: M1/70), CD45 (BioLegend, clone: 30F11), F4/80 (BioLegend,clone: BM8), CD16/32 (BioLegend,clone: 93), MHCII (BioLegend,clone: M5/114.15.2), CD11c (BioLegend, clone: HL3), CD68 (BD Pharmigen, clone: FA/11), P2RY12 (BioLegend, 848006), TMEM119 (Ab225494, clone: 106-6), BODIPY–FLC12 (D3822, Thermo Fisher), and propidium iodide (P3566 Thermo Fisher). Cell suspensions were analyzed using an LSRII flow cytometer (Becton Dickinson), and data were analyzed with FlowJo software (TreeStar).
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7

Multiparametric Flow Cytometry Immunophenotyping

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Cells were blocked with Human TrueStain FcX and TrueStain Monocyte Blocker (Biolegend) and stained with the following antibodies: anti-cluster of differentiation 34 (CD34; clone #561, Biolegend), anti-cluster of differentiation 43 (CD43; clone #CD43-10G7, Biolegend), anti-cluster of differentiation 14 (CD14; clone #HCD14, Biolegend), anti-CSF1R (clone #61708, R&D Systems), anti-CX-3-C motif chemokine receptor 1 (CX3CR1; clone #2A9-1, Biolegend), anti-Mer tyrosine kinase (MERTK; clone #125518, R&D Systems), anti-purinergic receptor P2Y12 (P2RY12; clone #S16001E, Biolegend) or anti-toll-like receptor 4 (TLR4; clone #610029, R&D Systems). All antibodies were titrated using negative control cells that don’t or poorly express the target protein. For intracellular staining, cells were fixed in 4% paraformaldehyde solution and permeabilized in 0.2% triton X-100 solution prior to antibody staining. Appropriate forward and side scatter profiles were used to exclude debris and doublets from the analysis. Dead cells were excluded based on LIVE/DEAD™ Fixable Aqua (Thermo Fisher Scientific) staining. Readings were done on an Attune™ Nxt Flow Cytometer and analyzed/visualized using FlowJo™ software.
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