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2 protocols using sc 6014 c 20

1

Immunofluorescence Analysis of NOTCH1, GOLGA1, and ATF6

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DND41, REC-1 and ALL/SILL cells were resuspended in PBS, spotted on immunofluorescence slides (Thermo Fisher Scientific, Waltham, MA) by a cytospin centrifuge (CR2000, Small Prime Centrifuge, Centurion) fixed for 10 min in 4% paraformaldehyde (#28908, Thermo Fisher Scientific, Waltham MA, USA), permeabilized in 0.2% Triton X-100 for 5 min, and blocked in 5% bovine serum albumin for 1 hour. Then, the cells were incubated with primary antibodies against full length NOTCH1 (#SC-6014 (C-20) Santa Cruz Biotechnology, Santa Cruz, CA, USA or #ab44986 (A6) Abcam, Cambridge, United Kingdom), GOLGA1 (#SAB1409131, Sigma-Aldrich, St. Louis, MO, USA), and ATF6 (#37149, Abcam, Cambridge, United Kingdom).
Alexa Fluor 488 (#A11029, Invitrogen, Carlsbad, CA, USA) and Alexa Fluor 568 (#A11036, Invitrogen, Carlsbad, CA, USA) were used as secondary antibodies and cells were incubated 1 hour at room temperature protected by the light. Nuclei were stained with DAPI (#D9542, Sigma-Aldrich, St. Louis, MO, USA). Coverslips were mounted with Prolong Gold Antifade reagent (#P36934, Thermo Fisher Scientific, Waltham MA, USA). Images were captured using a EVOS FL microscope (Thermo Fisher Scientific, Waltham MA, USA) and analyzed using ImageJ software (http://rsbweb.nih.gov/ij/).
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2

Quantifying NOTCH1 Signaling and Expression

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Western blots were stained with antibodies specific for γ-secretase–cleaved NOTCH1 (Val1744; #4147 or #2421; Cell Signaling Technology), the intracellular transcriptional activation domain of NOTCH1 (Hasserjian et al., 1996 (link)), or the C terminus of NOTCH1 (#SC-6014 [C-20]; Santa Cruz Biotechnology). Control stains were performed with antibodies specific for actin (#ACTN05; Thermo Fisher Scientific), vinculin (#2907; Abcam), or GAPDH (#137179; Santa Cruz Biotechnology). Blots were developed with anti-rabbit HRP (#NA9340V; Amersham) or anti-mouse-HRP (#NA9310V; Amersham).
Expression of FR1 and FR2 was determined using isoform-specific antibodies (#MAB5646, R&D Systems; #103988, Abcam). Immunofluorescence staining was performed on permeabilized cells using a murine monoclonal antibody against NOTCH1 (3294, Abcam), and species-specific secondary antibodies linked to Alexa Fluor 488. Slides were mounted with Prolong Gold anti-fade reagents and counterstained with DAPI (Invitrogen). Images were acquired using a Zeiss LSM510 confocal microscope at 100× power. Cell surface NOTCH1 was evaluated by staining nonpermeabilized cells with monoclonal anti-human NOTCH1 antibody (#FAB5317P; R&D Systems) as previously described (Roti et al., 2013 (link)).
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