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Dig rna labeling mix 10 conc

Manufactured by Roche

The DIG RNA Labeling Mix 10 × conc. is a laboratory reagent used for the in vitro transcription and labeling of RNA probes. The mix contains the necessary components, including digoxigenin-labeled nucleotides, to generate labeled RNA probes for various applications such as Northern blotting, in situ hybridization, and RNase protection assays.

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3 protocols using dig rna labeling mix 10 conc

1

Dual-color in situ hybridization in Drosophila embryos

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Embryos were dechorionated and fixed in fixation buffer (0.5x PBS, 25 mM EGTA, 4% formaldehyde and 50% Heptane) for 20 min at room temperature. Antisense RNA probes labeled with digoxigenin (DIG RNA Labeling Mix 10 × conc, Roche) and biotin (Biotin RNA Labeling Mix 10 × conc, Roche) were used to detect lacZ and snail RNAs, respectively. Hybridization was performed at 55 °C overnight in hybridization buffer (50% formamide, 5x SSC, 50 μg/ml Heparin, 100 μg/ml salmon sperm DNA, 0.1% Tween-20). Subsequently, embryos were washed with hybridization buffer at 55 °C and incubated with Western Blocking Buffer (Roche) at room temperature for one hour. Then, embryos were incubated with sheep anti-digoxigenin (Roche) and mouse anti-biotin primary antibodies (Invitrogen) at 4 °C for overnight, followed by incubation with Alexa Fluor 488 donkey anti-sheep (Invitrogen) and Alexa Flour 555 goat anti-mouse (Invitrogen) fluorescent secondary antibodies at room temperature for two hours. DNA was stained with Hoechst 33342 (Thermo Fisher Scientific), and embryos were mounted in ProLong Gold Antifade Mountant (Thermo Fisher Scientific). Imaging was performed on a Zeiss LSM 880 confocal microscope. Plan-Apochromat 20x / 0.8 N.A. objective was used. Images were captured in 16 bit.
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2

Labeling RNA Probes for In Situ Hybridization

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Antisense RNA probes labeled with digoxigenin (DIG RNA Labeling Mix 10 × conc, Roche) or biotin (Biotin RNA Labeling Mix 10 × conc, Roche) were transcribed using in vitro Transcription T7 Kit (Takara). Template DNA for sna probe was PCR amplified from genomic DNA using primers (5′-CGTAATACGACTCACTATAGGGCAGTTGGCTTAACAGTACTG-3′) and (5′-ACCTGTCACAGCCACCTCAGC-3′). Template DNA for sna shadow enhancer probe was PCR amplified from pbphi-TSS-PP7-sna shadow enhancer plasmid using primers (5′-GCATTGAGGTGTTTTGTTGGTCAAC-3′) and (5′-CGTAATACGACTCACTATAGGGTAAATTCCGATTTTTCTTGT-3′).
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3

Synthesis of Digoxigenin and Biotin Labeled Probes

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Antisense RNA probes labeled with digoxigenin (DIG RNA Labeling Mix 10 × conc, Roche) and biotin (Biotin RNA Labeling Mix 10 × conc, Roche) were in vitro transcribed using in vitro Transcription T7 Kit (Takara). Template DNA for ftz probe was PCR amplified from genomic DNA using primers (5 -CGT AAT ACG ACT CAC TAT AGG GTG GGG AAG AGA GTA ACT GAG CAT CGC-3 ) and (5 -ATT CGC AAA CTC ACC AGC GT-3 ). Template DNA for en probe was PCR amplified from cDNA using primers
(5 -CGT AAT ACG ACT CAC TAT AGG GCA TGA ACT TGC TTT AGC ACA AAC ATT TCG-3 ) and (5 -CAA CTA ATT CAG TCG TTG CGC TCG-3 ).
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