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Anti p300 sc 585

Manufactured by Santa Cruz Biotechnology

Anti-p300 (sc-585) is a primary antibody product offered by Santa Cruz Biotechnology. It is used to detect the p300 protein, which is a histone acetyltransferase that plays a critical role in various cellular processes, such as transcriptional regulation, DNA repair, and cell cycle control. The antibody can be utilized in techniques like Western blotting, immunoprecipitation, and immunohistochemistry to study the expression and localization of the p300 protein in biological samples.

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6 protocols using anti p300 sc 585

1

ChIP-seq of NK Cell Transcription Factors

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ChIP-seq was performed using ex vivo purified NK cells without or with cytokine stimulation. At least 10 million cells were used for transcription factor ChIP, and 2 million cells for histone mark ChIP. After chemically cross-linking cells, chromatin was fragmented by sonication and immunoprecipitated by anti-H3K27Ac (ab4729, AbCam), anti-p300 (sc585, Santa Cruz) or anti-T-bet (sc21003, Santa Cruz). After recovering purified DNA, 10 ng or more of DNA was used to generate libraries according to the vendor’s manual for illumina platform (NEB #E6240S/L, New England BioLabs). Illumina HiSeq2500 (H3K27Ac, T-bet) or Genome Analyzer II (p300) were used for 50 cycle single read sequencing. SICER (K27Ac) or MACS 1.4.2 (T-bet, p300) were used for peak calling using a reference genome mm9.
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2

ChIP Assay Protocol for Epigenetic Profiling

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ChIP assays were performed essentially as described before [[29] , [30] , [31] , [32] , [33] , [34] , [35] (link)]. Briefly, chromatin in control and treated cells were cross-linked with 1% formaldehyde. Cells were incubated in lysis buffer (150 mM NaCl, 25 mM Tris pH 7.5, 1% Triton X-100, 0.1% SDS, 0.5% deoxycholate) supplemented with protease inhibitor tablet and PMSF. DNA was fragmented into ~500 bp pieces using a Branson 250 sonicator. Aliquots of lysates containing 200 μg of protein were used for each immunoprecipitation reaction with anti-acetyl H3 (06-599, Millipore), anti-acetyl H4 (06-598, Millipore), anti-acetyl H3K27 (17-683, Millipore), anti-H4K16 (13534, Cell Signaling), anti-p300 (sc-585, Santa Cruz), anti-SRF (5147, Cell Signaling), and anti-KAT8 (13842-1, Proteintech) antibodies. Precipitated genomic DNA was amplified by real-time PCR with primers that span the target promoters or a control promoter (GAPDH). Serially diluted genomic DNA extracted from normal cells/tissues was used to generate a standard curve to calculate the amount of DNA being precipitated by a particular antibody. A total of 10% of the starting material is also included as the input. Data are then normalized to the input and expressed as fold changes compared to the control group. All experiments were repeated at least three times.
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3

Chromatin Immunoprecipitation Sequencing of NK Cells

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ChIP-Seq was performed using at least 10 million sorted NK cells without or with cytokine stimulation. After chemically cross-linking cells, chromatin was fragmented by sonication and immunoprecipitated by anti-H3K27Ac (ab4729; Abcam), anti-H3K4me3 (04–745; Millipore), anti-H3K27me3 (07–449; Millipore), anti-H3K4me1 (ab8895; AbCam), anti-p300 (sc585; Santa Cruz), anti-STAT4 (sc486; Santa Cruz), anti-STAT5 (ab7969; AbCam) or anti-T-bet (sc21003; Santa Cruz). After recovering purified DNA, 10 ng or more of DNA was used to generate libraries according to the vendor’s manual for the Illumina platform (E6240S/L; New England BioLabs). Illumina HiSeq 2500 or Genome Analyzer II was used for 50-cycle single-read sequencing.
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4

Western Blot Analysis of Myogenic Factors

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Cells were lysed in Protein extraction buffer (50 mM Tris pH 8, 150 mM NaCl, 0.5% NP40 and 1 mM EGTA) and protein concentrations were determined using the Bio-Rad DC Protein Assay reagents package (Bio-rad). A total of 40 µg of total proteins were separated by SDS-PAGE and transferred to Nitrocellulose membranes, blocked 1 h at room temperature (10% milk, 0.1% Tween-20 TBS) and probed at 4 °C overnight (2% milk, 0.1% Tween-20 TBS) with the following primary antibodies: anti-CBP (sc-369, Santa Cruz Biotechnology); anti-P300 (sc-585, Santa Cruz Biotechnology); anti-Myf5 (sc-302, Santa Cruz Biotechnology); anti-Myogenin (sc-576, Santa Cruz Biotechnology); anti-Mef2C (sc-13266, Santa Cruz Biotechnology); anti-Vinculin (sc-5573, Santa Cruz Biotechnology) and anti-MHC (MF20, Developmental Studies Hybridoma Bank). After washings, membranes were incubated with horseradish peroxidase-conjugated secondary antibodies for 1 h. Detection was performed using Lumi-lightplus Western Blotting substrate (Roche) according to manufacturer’s instruction. Original scans of all western blots shown in this study can be found in Supplementary Fig. S7.
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5

Chromatin Immunoprecipitation of Blimp-1 and Histone Modifications

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CD4+ T cells were cross-linked for 10 minutes by adding formaldehyde to tissue culture medium; the final concentration of formaldehyde was 1%. Cross-linked cells were washed with phosphate-buffered saline containing protease inhibitors. Then the subsequent steps were performed using a commercial ChIP kit (MilliporeSigma). Finally, nuclear extraction was performed according to the manufacturer’s instructions. The lysates were sonicated for 20 cycles of 30 seconds each, resting on ice for 30 seconds between cycles. Cross-linked and sonicated chromatin was incubated overnight with anti–Blimp-1 (A01647, GenScript), anti–acetylated H3 (06-599, MilliporeSigma), anti–acetylated H3 (K9) (07-352, MilliporeSigma), anti–trimethyl-histone H3 (K4) (17-641, MilliporeSigma), anti–acetylated H4 (06-866, MilliporeSigma), anti-CBP (7389, Cell Signaling Technology), anti-p300 (sc-585, Santa Cruz Biotechnology), anti–trimethyl-histone H3 (K9) (ab-8898, Abcam), anti–trimethyl-histone H3 (K27) (ab-6002, Abcam), anti-HDAC2 (ab-7029, Abcam), anti-V5 (13-202, Cell Signaling Technologies), and anti-HA (A190-108A, Bethyl Laboratories) antibodies. DNA fragments were recovered using a DNA purification kit provided in the ChIP kit (MilliporeSigma) and analyzed by quantitative PCR using specific primers (Supplemental Table 2). Samples from at least 3 independent immunoprecipitations were analyzed.
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6

ChIP-seq Analysis of Histone Modifications

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Cells cultured under indicated conditions were cross-linked for 10 minutes with 1% formaldehyde and harvested. Cells were lysed by sonication and immunoprecipitated with anti-H3K4me1 (ab8895, AbCam), anti-H3K4me3 (ab8580, AbCam), anti-H3K27me3 (07-449, Millipore), anti-STAT3 (14-6727, eBiosciences), and anti-p300 (sc-585, Santa Cruz Biotechnology) antibodies as previously described (Shih et al., 2016 (link)). Recovered DNA fragments were blunt-end ligated to the Illumina adaptors, amplified, and sequenced by using Genome Analyzer (Illumina, San Diego, CA).
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