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Probe qpcr master mix

Manufactured by Takara Bio
Sourced in Japan

Probe qPCR Master Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) assays using probe-based detection. It contains all the necessary components, including a DNA polymerase, buffer, and dNTPs, to perform qPCR reactions.

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2 protocols using probe qpcr master mix

1

Quantitative Detection of HSV-1 DNA

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The extraction of virus DNA was carried out using the PureLinkTM Viral RNA/DNA Mini Kit (Thermo Fish Scientific Inc., Waltham, MA, USA), according to the manufacturer’s instruction. Cells were lysed with proteinase K, lysis buffer and ethanol. Then, the DNA was purified by centrifugation. Finally, 40 μL sterile RNase-free water elution of DNA was used. A total of 20 μL of the qPCR reaction system was prepared with probe qPCR Master Mix (Takara, Shiga, Japan). The final concentration of forward and reverse primers was 200 nM. The PCR thermal cycling program is as follows: 95 °C for 10 s and 58 °C for 40 s with the reaction cycle of 45. Fluorescence signals were recorded with a Roche LightCycler480. The HSV-1 primers were Forward, CGTCCCTGTCCTTTTTCCCA; Reverse, ACGTAGCACGGTAGGTCAC; Probe, AAGCATCGACCGGTCCGCGCTAGTT. We used an HSV-DNA polymerase plasmid dilution (106 copies, 105 copies, 104 copies, 103 copies, 102 copies and 101 copies) to generate the standard curve. Gene expression was calculated using the standard curve and CT value.
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2

Optimized qPCR for COWP and 18S rRNA

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Real Time PCR protocol was separately standardized for COWP and18SSU rRNA probe and primers using positive control cDNA. Probe qPCR master mix (TaKaRa, Japan) was used for the quantitative analysis of COWP and 18SSU rRNA genes. Primers and probes were titrated serially starting from 2pmol/reaction, 4pmol/reaction, 6pmol/reaction, 8pmol/reaction to 10pmol/reaction for COWP and 18ssu rRNA genes individually (Table 2A). All the reactions were performed in duplicates in Premix Ex Taq Probe qPCR master mix (2X) (TaKaRa, Japan Cat#RR390) in a final volume of 25µl per tube in a CFX96 Real-time PCR system® (Bio-Rad) with the thermal conditions as described below (Figure S3 and Table 2B). The reaction also included a positive control (PC) and No Template Control (NTC) for interpretation of the results. (Table 2A and 2B here)
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