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288 protocols using zetaview

1

Exosome Characterization by ZetaView and TEM

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The concentration and size distribution of the isolated exosomes were detected by ZetaView (Particle Metrix, Germany) and analyzed using the in-build nanoparticle tracking analysis (NTA) software ZetaView 8.02.31. A 20 μL aliquot that contained about 4-5 × 106 particles was fixed with 1% glutaraldehyde and loaded onto a carbon-coated grid for 2 min at room temperature. The grid was negatively stained with 2% aqueous phosphotungstic acid for 1 min and then imaged under a transmission electron microscope (JEM-1400, Japan).
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Exosome Nanoparticle Tracking Analysis

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For NTA using ZetaView (Particle Metrix, Meerbusch, Germany), 1 µL of exosomes were diluted in sterile-filtered PBS 1:1000 and ZetaView settings were adjusted to sensitivity 80%, shutter 100, 11 positions, and 2 cycles.
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Nanoparticle Tracking Analysis of EVs

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Concentrations and vesicle size distributions were determined by NTA (nanoparticle tracking analysis, Malvern NanoSight NS300, Malvern Technologies, Malvern, UK or ZetaView, Particle Metrix, Wildmoos, Germany) equipped with a 488 nm laser at 1:100 and 1:1000 dilutions. Every sample was counted 5 times for 1 min at 20 °C. The camera level was set at 16, and traces were analyzed using NTA 3.1.54 (Malvern NanoSight NS300, Malvern Technologies, Malvern, UK) or ZetaView 8.05.11 software (ZetaView, Particle Metrix, Wildmoos, Germany) with a detection threshold of 5, as described in [26 (link)]. To compare the cellular release of EVs between treatments, the absolute counts of EVs in the cell media samples were normalized to the cell counts in the respective culture vessels.
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4

Isolation and Characterization of Extracellular Vesicles from Hypoxic and Normoxic hADSCs

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hADSCs at passage 3 were cultured under hypoxia (5% oxygen) and normoxia (20% oxygen) until cells reached 70–80% confluency. The medium was then replaced with serum-free Dulbecco’s modified Eagle’s medium (DMEM)/F12 for 24 h to collect conditioned medium. Cell debris and apoptotic bodies were discarded after sequential centrifugations at 500 ×g, 3,000 ×g and 10,000 ×g for 5, 15 and 60 min, respectively. The supernatant was then ultra-centrifuged at 100,000 ×g at 4 °C for 1 h using a 45 Ti rotor (Beckman Coulter, Optimal L-80XP, USA). The remaining precipitate was resuspended in PBS and filtered with a 0.22-mm filter (Millipore, Billerica, MA, USA), then ultra-centrifuged at 100,000 ×g at 4 °C for 1 h. EVs were stored at −80 °C until further use. EVs obtained from both conditions were characterised using 80 kV TEM (HITACHI H-7000FA, Japan). The particle size distribution and concentrations of EVs were analysed by ZetaVIEW (Particle Metrix, ZetaVIEW S/N 17–315, Germany) and Nanoparticle Tracking Analysis software (ZetaVIEW 8.04.02). Antibodies against CD9, CD63, Alix, β-actin and calnexin (Abcam, London, UK) were used in western blotting. In addition, the supernatant of EV lysates was prepared, and the protein content was evaluated using a BCA Protein Assay Kit (Sigma, Silicon Valley, USA).
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5

Characterization of Extracellular Vesicles by Western Blot and TEM

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For Western blot analysis (WB), MSC proteins and exosomes were added to 12% SDS-PAGE gels and transferred onto polyvinylidene fluoride membranes (PVDF membranes, Millipore), followed by blocking in 5% skim milk for 2 h at RT. Next, the membrane was incubated with diluted primary antibodies (anti-CD9 (BD Biosciences), anti-CD63 (BD Biosciences), anti-TSG101 (BD Biosciences), and anti-calnexin (BD Biosciences)) at 4°C on a shaker overnight. After three washes with Tris-buffered saline/Tween (TBST), the membrane was incubated with horseradish peroxidase-conjugated secondary antibody (Proteintech) at RT on a shaker for 2 h. Finally, the membranes were analyzed via the ChemiDoc™ XRS system (Bio-Rad).27 (link)Transmission electron microscopy (TEM, Hitachi, Japan) was used to observe the morphology of the exosomes and take images. Nanoparticle tracking analysis (NTA) was performed by electrophoresis and Brownian motion video analysis laser scattering microscopy (Particlemetrix) to analyze the particle size, concentration and distribution, and the results were analyzed with ZetaView (ZetaView 8.04.02 software).
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Exosome Size Characterization Using NTA

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Isolated exosomes were diluted in PBS and analyzed using the ZetaView (S/N 17-310, Particle Metrix, Germany) with NTA software (ZetaView 8.04.02). Triplicate measurements were recorded for each sample. Size distribution and concentration profiles were averaged to derive the representative size distribution profiles.
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7

EV Concentration Measurement by ZetaView

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After the isolation, the concentration of all the samples was measured b) by ZetaView (Particle Metrix GmbH, Germany). 1 μL of concentrated EVs was diluted in sterile-filtered PBS in a dilution 1:1,000 and visualized using the ZetaView (sensitivity 80%, shutter 100, 11 positions, 2 cycles; Particle Metrix, Germany).
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8

Nanoparticle Size Characterization using NTA

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Size distribution and concentration measurement were conducted on a second generation nanoparticle tracking analysis (NTA) instrument, the ZetaView (Particle Metrix, Germany) with a 488‐nm laser and software ZetaView 8.04.02. Temperature was controlled at 24°C. The data acquisition parameters were set as follows: positions (11), cycles number (1), sensitivity (85), frame rate (30), shutter (70), minimum brightness (20), max size (1,000), and min size (5). All parameters were recommended by the manufacturer for EV analysis. After initial wash and calibration, samples were diluted to 3 × 107 ∼ 1 × 108 particles per milliliter in PBS.
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9

Quantification of Extracellular Vesicles

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EVs were quantified in media collected from calcification assays using previously established protocols [53 (link)]. Briefly, media was aspirated from VSMCs and spun at 500× g for 5 min to eliminate cell debris and snap-frozen until further analysis. Further, calibration beads and 50 uL of the supernatants were diluted in PBS to a final volume of 1 mL. EVs quantification was performed using nanoparticle tracking analysis (NTA, ZetaView, Particle Metrix, Inning am Ammersee, Germany). Optimum scanning conditions were established using previously described protocols [53 (link)]. A washing step with distilled water was performed between each technical sample reading. Data analysis was performed with NTA 2.1 software (ZetaView, Particle Metrix, Inning am Ammersee, Germany).
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10

Nanoparticle Quantification via ZetaView

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Nanoparticle quantification was carried out as previously described (Juodeikis et al., 2022 ). Briefly, particles were quantified using the ZetaView instrument (Particle Metrix) with ZetaView (version 8.05.12 SP1) software running a 2 cycle 11 position high frame rate analysis at 25°C. Camera control settings: 80 Sensitivity; 30 Frame Rate; 100 Shutter. Post‐acquisition parameters: 20 Min Brightness; 2000 Max Area; 5 Min Area; 30 Tracelength; 5 nm/Class; 64 Classes/Decade.
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